Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1128 93.3 4e-14 seq347 89.7 4e-13 seq1118 84.2 2e-11 >seq1128 Length=278557 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| || |||||| |||||||||||||||| ||| ||| | | ||||||| ||| Sbjct 247017 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAG-CAAGGGTCCTTCCATCCTCCAACTG 246959 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | | |||||||||| ||| || Sbjct 246958 CTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTT 246899 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | ||||| || | |||||| ||| | || ||||| || || || Sbjct 246898 CGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGT 246839 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| || ||||||||| Sbjct 246838 GAGGGTCTTCACGAATATCTGCATC 246814 >seq347 Length=438793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 48497 AAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCA 48556 ||||| || |||| | | || | ||| || || |||||| ||||| || ||||| Sbjct 269906 AAACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCT 269965 Query 48557 GCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCAC 48615 || | | || ||| | |||||||||||||| || | | || || | ||||||||| | Sbjct 269966 GCAAGAGTG-CGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAG 270024 Query 48616 CGGCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACT 48674 || | | |||||||||| ||| || ||| || | | | ||||| || | | || Sbjct 270025 TGGAATCCCTTCCTTGTCCTGAATCTT-TGCTTTTACATTTTCAATGGTGTCCGAACTCT 270083 Query 48675 CCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | ||| | || |||||||| || || | |||||| |||||||||||||| Sbjct 270084 CAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 >seq1118 Length=308725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || || || || ||| ||||||||||||||| |||||||| | | || || | || || Sbjct 111342 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGC-CATCTTC 111400 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || || ||||| || | || | | || || || || | | |||||||||| Sbjct 111401 AAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTG 111460 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | ||||| || | ||| ||||| ||||||||||| Sbjct 111461 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTT 111520 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| |||||||||||||||||||| Sbjct 111521 GCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421167479878307