Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3642 118 6e-22 seq33 114 7e-21 seq1253 111 8e-20 seq2832 109 3e-19 seq372 107 1e-18 seq4172 102 4e-17 >seq3642 Length=212375 Score = 118 bits (130), Expect = 6e-22 Identities = 89/105 (85%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACC 11484 |||| |||||| | ||||||| |||| ||||||||| | | |||||||| ||||| Sbjct 177275 AAATTCAGAATTTAAAAAAAATAAAATAAAATGGCCCATGCAGGTCTCGAACCTGCGACC 177334 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 177335 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 177379 >seq33 Length=1145657 Score = 114 bits (126), Expect = 7e-21 Identities = 81/93 (87%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11440 TAATAAAAAATCA---AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| |||||| || |||||||||||| | | |||||||| ||||||||||||||||| Sbjct 1033033 TAAAAAAAAAACACATAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 1032974 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||||||||||| |||| Sbjct 1032973 GCACGACGCTCTAACCAACTGAGCTAATAGGCC 1032941 >seq1253 Length=434820 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 243512 AAAAATAAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 243454 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 243453 CTCTAACCAACTGAGCTAATAGGCC 243429 >seq2832 Length=147546 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 91689 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 91630 Query 11516 TGAGCTAATGGGCCGTCGA 11534 ||||||||| |||||| || Sbjct 91629 TGAGCTAATAGGCCGTTGA 91611 >seq372 Length=537768 Score = 107 bits (118), Expect = 1e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| || ||||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 133418 AAAACAGATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 133359 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || |||| |||||||||| |||| Sbjct 133358 CTAACCAGCTGAGCTAATAGGCC 133336 >seq4172 Length=105317 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 42185 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 42126 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 42125 CAGCTGAGCTAATAGGCC 42108 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261439230830332