Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq317 159 5e-35 seq910 138 2e-28 seq46 136 6e-28 seq1 134 2e-27 seq268 132 8e-27 seq222 125 1e-24 seq511 122 1e-23 seq119 84.2 3e-12 >seq317 Length=494291 Score = 159 bits (176), Expect = 5e-35 Identities = 197/267 (74%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || ||||||||||| |||||||||||||| || Sbjct 468286 GCCAAGCGCCACCGCAAGGTC-CTCCGTGACAACATCCAAGGCATCACCAAGCCAGCCAT 468344 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||| ||||| || ||||| || ||| | |||| ||||| | Sbjct 468345 TCGTCGATTGGCTCGTCGAGGTGGGGTGAAGCGCATCAGTGGCCTCATCTACGAAGAAAC 468404 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | |||||||||||| ||| || || |||||| || || ||||| Sbjct 468405 TCGTGGTGTGCTCAAGATCTTCCTCGAGAATGTCATTAGAGATGCTGTCACTTACACCGA 468464 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || |||||||| || |||||||| | ||||| || | || | ||||| Sbjct 468465 GCACGCTCGCCGCAAGACTGTGACTGCCATGGATGTAGTCTACGCGCTCAAGAGGCAAGG 468524 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | | ||||| ||||| |||| Sbjct 468525 CAGGACTCTCTATGGGTTTGGTGGTTA 468551 >seq910 Length=843977 Score = 138 bits (152), Expect = 2e-28 Identities = 178/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || || ||||| ||||| | ||| Sbjct 736041 CTCCGTGACAACATCCAGGGTATCACCAAGCCTGCAATTCGACGTCTTGCTCGCAGAGGT 736100 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || |||| || ||||||| |||| |||| || | ||||| ||| Sbjct 736101 GGCGTGAAGCGTATCAGTGGACTGATCTATGAGGAGACACGTGGGGTCCTCAAGATATTC 736160 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| ||||||| | || || |||||||| | | |||||||| Sbjct 736161 TTGGAGAATGTGATCCGTGATGCTGTGACTTACACTGAGCACGCGAGGAGAAAGACTGTT 736220 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| |||| ||||| ||||| | || ||| | | | ||||| ||||| Sbjct 736221 ACTGCTATGGATGTCGTTTATGCGTTGAAGAGGCAGGGCAGGACTCTATATGGGTTTGGT 736280 Query 16694 AGTTAA 16699 ||||| Sbjct 736281 GGTTAA 736286 >seq46 Length=771246 Score = 136 bits (150), Expect = 6e-28 Identities = 177/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| ||||| |||||||| ||||| | || Sbjct 268269 CTCCGTGATAACATCCAGGGCATCACCAAGCCTGCTATTCGTCGTCTAGCTCGCAGAGGA 268210 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || ||| || | || || |||| |||| || | ||||||||| Sbjct 268209 GGCGTGAAGCGTATCAGTGGGCTGATTTACGAGGAGACACGTGGCGTCCTTAAGATCTTC 268150 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| ||||||| | || ||||||||||| | | |||||||| Sbjct 268149 TTGGAGAACGTGATCCGTGATGCTGTGACTTACACCGAGCACGCAAGGAGAAAGACTGTG 268090 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || | |||||| | || ||||| ||||| | || || | | | ||||| ||||| Sbjct 268089 ACTGCTATGGATGTTGTTTATGCCTTGAAGAGGCAGGGTAGGACTCTGTATGGATTTGGG 268030 Query 16694 AGTTA 16698 |||| Sbjct 268029 GGTTA 268025 >seq1 Length=1941800 Score = 134 bits (148), Expect = 2e-27 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || |||||||| ||||| | ||| Sbjct 788073 CTCCGTGACAACATCCAGGGTATCACCAAGCCTGCAATTCGTCGTCTTGCTCGCAGAGGT 788014 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| || |||| || ||||||| |||| |||| || | ||||| ||| Sbjct 788013 GGCGTGAAGCGTATCAGTGGACTGATCTATGAGGAGACACGTGGGGTCCTCAAGATATTC 787954 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| ||||||| | || || |||||||| | | |||||||| Sbjct 787953 TTGGAGAATGTGATCCGTGATGCTGTGACTTACACTGAGCACGCGAGGAGAAAGACTGTT 787894 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || | |||||| |||| ||||| ||||| Sbjct 787893 ACTGCTATGGATGTCGTTTATGCGTTGAA 787865 >seq268 Length=699466 Score = 132 bits (146), Expect = 8e-27 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| || ||||||||||| || |||||||| | || | | || Sbjct 634545 CTTCGTGATAACATCCAGGGCATCACCAAGCCTGCAATCCGTCGATTAGCGAGGAGAGGA 634486 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||| | | ||| || |||| || |||| |||| || | ||||||||| Sbjct 634485 GGAGTTAAGAGGATTAGTGGCTTAATCTACGAGGAGACACGTGGAGTCCTCAAGATCTTC 634426 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| ||| || | || ||||||||||||| |||||||| || Sbjct 634425 CTCGAGAACGTTATCCGTGACGCCGTTACTTACACCGAGCACGCTAGGCGTAAGACCGTG 634366 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 || |||||||| | |||||||| Sbjct 634365 ACGGCCATGGATGTTGTCTATGC 634343 >seq222 Length=774542 Score = 125 bits (138), Expect = 1e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || |||||||| ||||| | ||| Sbjct 28487 CTCCGTGACAACATCCAGGGTATCACCAAGCCTGCAATTCGTCGTCTTGCTCGCAGAGGT 28546 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||| | || |||| || ||||||| |||| |||| | | ||||| ||| Sbjct 28547 GGCGTGAAGCATATCAGTGGACTGATCTATGAGGAGACACGTGGGCTCCTCAAGATATTC 28606 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| ||||||| | || || |||||||| | | |||||||| Sbjct 28607 TTGGAGAATGTGATCCGTGATGCTGTGACTTACACTGAGCACGCGAGGAGAAAGACTGTT 28666 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAA 16662 || | |||||| |||| ||||| ||||| Sbjct 28667 ACTGCTATGGATGTCGTTTATGCGTTGAA 28695 >seq511 Length=508026 Score = 122 bits (134), Expect = 1e-23 Identities = 176/247 (71%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| ||||| |||||||| ||| | | || Sbjct 150478 CTCCGTGACAACATCCAGGGCATCACCAAGCCTGCTATTCGTCGTCTAGCTAGCAGAGGA 150537 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC-TT 16572 || || |||||| || ||| || | || || |||| |||| || | |||||| || Sbjct 150538 GGCGTGAAGCGTATCAGTGGGCTGATTTACGAGGAGACACGTGGCGTCCTTAAGATCTTT 150597 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| |||| ||||||| | || ||||||||||| | | |||||||| Sbjct 150598 CTTGGAGAACGTGATCCGTGATGCTGTAACTTACACCGAGCACGCAAGGAGAAAGACTGT 150657 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | |||||| | || ||||| ||||| | || || | | | ||||| ||||| Sbjct 150658 GACTGCTATGGATGTTGTTTATGCCTTGAAGAGGCAGGGTAGGACTCTCTATGGATTTGG 150717 Query 16693 AAGTTAA 16699 ||||| Sbjct 150718 GGGTTAA 150724 Score = 105 bits (116), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| ||||| |||||||| ||||| | || Sbjct 148095 CTCCGTGACAACATCCAGGGCATCACCAAGCCTGCTATTCGTCGTCTAGCTCGCAGAGGA 148154 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC-TT 16572 || || |||||| || ||| || | || || |||| |||| || | |||||| || Sbjct 148155 GGCGTGAAGCGTATCAGTGGGCTGATTTACGAGGAGACACGTGGCGTCCTTAAGATCTTT 148214 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| |||| ||||||| | || ||||||||||| | | |||||||| Sbjct 148215 CTTGGAGAACGTGATCCGTGATGCTGTAACTTACACCGAGCACGCAAGGAGAAAGACTGT 148274 Query 16633 CAC 16635 || Sbjct 148275 GAC 148277 >seq119 Length=741777 Score = 84.2 bits (92), Expect = 3e-12 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || |||||||| ||||| || ||| | || || || | |||| ||| Sbjct 170388 GAGATAACATTCAGGGAATCACAAAGCCTGCCATCAGACGCCTCGCGAGGGGTGGCGGAC 170447 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 || ||||| || || | |||| | |||| | | || | ||| |||||||| Sbjct 170448 TCGAGCGTATCAGCGGTCTCATCTACAAGGAGACCAGAGGCGTCCTCAAGGTCTTCCTCG 170507 Query 16578 AGACCGT--TATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 ||| ||| | | || |||| || ||| |||||||| ||| | ||||||||||| Sbjct 170508 AGAACGTCTTTTTCA--ATGCCGTCACCTACACCGAGCATGCTCGCAGCAAGACTGTCAC 170565 Query 16636 CTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| |||| ||| | ||||| | |||||| Sbjct 170566 TGCCATGGCCGTCGTTTATTCCTTGAAGAGGCAAGGC 170602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060290395751