Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2265 504 9e-138 seq1633 149 8e-31 seq6680 95.1 2e-14 >seq2265 Length=185284 Score = 504 bits (558), Expect = 9e-138 Identities = 616/836 (74%), Gaps = 7/836 (1%) Strand=Plus/Plus Query 138045 ACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 138104 || || || ||||| |||||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 138105 CCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTG 138164 ||||| | ||||||||| | || |||| ||| | || || || ||||||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 138165 GCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCGT 138224 || || ||||| | || | || || || |||||||| || || ||||| | |||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 138225 CTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTC 138284 | || || || || || || |||||| ||||||||| ||| || || || || || Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 138285 AGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGT 138344 || |||||||| ||||| ||||||| || ||||||||||||| || |||||| Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 138345 GTGGCAGCAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTC 138401 || ||||| || || |||| |||| || |||| ||||||| ||||| ||||| | Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAATTGGACATTG 94587 Query 138402 AACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATT 138461 || || |||||||| ||||| || | ||| | | || | |||||| || || |||||| Sbjct 94588 AATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATT 94647 Query 138462 CATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAA 138521 ||||||||||| || ||||||||||| | ||||||||| || ||||||| || | Sbjct 94648 CATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTAT 94707 Query 138522 GCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGG 138581 || ||| | || ||||||| ||||||| ||||||||||| ||||||||||| | ||| Sbjct 94708 GCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 94767 Query 138582 TCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTT 138641 || ||||| ||||| ||||||||| ||||| |||||| | || ||||||||| | ||| Sbjct 94768 TCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 94827 Query 138642 GTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTA 138701 || || || | ||| | |||| || | | || | | ||||| ||||| |||||| Sbjct 94828 GTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTA 94887 Query 138702 CGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACC 138761 || || ||||| ||||| || || |||||||||||||| ||||||| ||||| ||||| Sbjct 94888 CGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACT 94947 Query 138762 TTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGAT 138821 ||||||||||| || ||||| | || |||||| | ||| | |||||||| || ||| Sbjct 94948 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGAT 95007 Query 138822 CAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 || ||||| |||||| || | || ||||| || || |||| | || |||||||| Sbjct 95008 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 149 bits (164), Expect = 8e-31 Identities = 265/384 (69%), Gaps = 2/384 (1%) Strand=Plus/Minus Query 135389 ACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTGATGATTCCTACTCTT 135448 |||||||| || |||| || || | | |||||||| ||||||| |||||| | Sbjct 238532 ACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTA 238473 Query 135449 CTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGA 135507 | | || || |||| |||||| | | | |||| ||| | ||| | | |||||||| Sbjct 238472 TTGACTGCAACT-TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGA 238414 Query 135508 CGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGC 135567 ||| || || ||||||||| | | |||||| | || ||||| | || || |||||||| Sbjct 238413 CGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGC 238354 Query 135568 TGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTC 135627 |||| ||| || || || || | | ||| || || | || ||||| || || Sbjct 238353 CATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTC 238294 Query 135628 TCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTAT 135687 ||| ||| ||| |||| ||||| ||||||| | ||| | || | || || | | Sbjct 238293 CGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACT 238234 Query 135688 CGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCC 135747 || || | ||||||||| || |||||||||| || ||| ||||||||||||| Sbjct 238233 TGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCC 238174 Query 135748 TTGGATTTGTGTCGCTTACTCAGC 135771 ||||||| ||| || || ||||| Sbjct 238173 TTGGATTGCTGTTGCATATTCAGC 238150 >seq6680 Length=52110 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 138482 TACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGA 138541 || ||| | ||||||||| || ||||||| || || ||| | || ||||||| Sbjct 10918 TATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGC 10859 Query 138542 AGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGC 138601 |||||||| ||||||||||| |||||||||| | ||| ||||||||||||| || Sbjct 10858 TGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGGGTTTA 10799 Query 138602 TTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 138643 ||| |||| | |||| | | ||||||||| | ||||| Sbjct 10798 TTTCTTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627839996572800