Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq1633 114 4e-21 seq7236 86.0 2e-12 >seq1633 Length=412253 Score = 114 bits (126), Expect = 4e-21 Identities = 255/383 (67%), Gaps = 0/383 (0%) Strand=Plus/Minus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || || || |||| ||||| | | |||||||| || | ||||| ||| ||| Sbjct 238532 ACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTA 238473 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | |||| ||| || ||||| ||| | || || | || | ||||||| || Sbjct 238472 TTGACTGCAACTTCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGAC 238413 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || ||||| || |||||| | || || | || ||||||| |||||||||||| || Sbjct 238412 GGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCC 238353 Query 19485 GTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACT 19544 | |||| | || || ||||| ||| |||||| |||| || ||||| | | Sbjct 238352 ATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCC 238293 Query 19545 TTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATA 19604 | | ||| ||||||||||| ||| |||| || | || |||| | || || ||| | Sbjct 238292 GTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTT 238233 Query 19605 GGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCA 19664 || ||||| ||| || | |||||||||| || | | || || ||| | || Sbjct 238232 GGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCT 238173 Query 19665 TGGATATTCGTAGCATATACAGC 19687 ||||| || |||||| |||| Sbjct 238172 TGGATTGCTGTTGCATATTCAGC 238150 >seq7236 Length=99803 Score = 86.0 bits (94), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 19463 AAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTA 19522 ||| ||||| |||||||| || | || | | | | || ||||| |||||||| | Sbjct 62609 AAATAATATAATTTCTGGTGCCATTATTTCTACTTATACAGCTATAGGTTTGCACTTTCA 62668 Query 19523 TCCGATCTGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAAC 19581 |||| |||||||| |||| || ||||||| ||||||||||| ||| |||| || | | Sbjct 62669 CTCGATATGGGAAGC-GGCATCTGTAGATGAATGGTTATACAATGGCAGTCCTTACGAGC 62727 Query 19582 TTGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 | |||| | || |||||| | |||||||| Sbjct 62728 TAATTGTTCTACATTTCTTAGTTGGAGTAGC 62758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144413629516092