Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2265 313 3e-80 seq1633 114 1e-20 >seq2265 Length=185284 Score = 313 bits (346), Expect = 3e-80 Identities = 586/860 (68%), Gaps = 22/860 (3%) Strand=Plus/Plus Query 171973 TAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGG 172032 |||| || ||||| || || ||| | || | | | ||| | | ||||| ||||||| Sbjct 94230 TAACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGG 94289 Query 172033 GACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTG 172092 | ||||| |||||||||||| || || |||| |||||||||||| || |||| |||| Sbjct 94290 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 94349 Query 172093 TAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAG 172152 | || |||| || || ||||| |||||||||||||| | || ||||| |||| Sbjct 94350 TTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTC 94409 Query 172153 GACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCA 172212 || ||||| || || ||||| || ||| | ||||||| | |||||||| || Sbjct 94410 GATTTGTT-CAATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTG 94468 Query 172213 CGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTG 172272 | || || || |||||| | |||||| | |||||||||| || ||| |||| Sbjct 94469 TTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTG 94528 Query 172273 GTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTA 172332 |||| ||||| || ||||| | || | || | || || || || ||| || | | Sbjct 94529 GTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 94588 Query 172333 ATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATAC 172392 ||||||||||||| ||||| || | ||| || | || | || | ||||| || || | Sbjct 94589 ATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTC 94648 Query 172393 ATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGA 172452 ||||||| || || | || || || | |||||| || | | | Sbjct 94649 ATGGTGCTACTGTGGAAAATACTTTATTTGAAGA---------------TG--GTGATGG 94691 Query 172453 TTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGA 172512 | ||| |||| ||| || || | || || || | ||||||||||| ||| Sbjct 94692 TGCAA-ATACA---TTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGG 94747 Query 172513 TTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCT 172572 | ||||||||| | || ||||| || |||||||| || || ||||| || ||| | | | Sbjct 94748 TCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGT 94807 Query 172573 TACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCG 172632 |||| ||| ||||||| || ||||| || | ||| | |||| || | || | | Sbjct 94808 TACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAG 94867 Query 172633 TAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAG 172692 | ||||| || || ||||| | || || ||||| || ||||| || || | ||||| Sbjct 94868 TCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGA 94927 Query 172693 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 172752 |||| || || ||||| || |||||||| || || ||||| | || |||||||| | Sbjct 94928 AAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTC 94987 Query 172753 CATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGC 172812 | |||||| | || ||||| || ||||| ||| || | ||||| || || || ||| Sbjct 94988 CTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGC 95047 Query 172813 CACGAGGCAACGCACTATAA 172832 | || || ||||| || ||| Sbjct 95048 CCCGTGGAAACGCTCTTTAA 95067 >seq1633 Length=412253 Score = 114 bits (126), Expect = 1e-20 Identities = 237/353 (67%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 170711 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCA 170770 ||||||||||| || |||||||| | | | ||||| || || || ||| | | Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGTT 238443 Query 170771 TTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTC 170830 |||| ||| ||||| || | ||||| ||||| || | ||||| ||| | | ||| | Sbjct 238442 GTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTA 238383 Query 170831 TTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTA 170890 || ||||| |||| || || |||||||| | |||| |||| || ||||| || Sbjct 238382 TTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTG 238323 Query 170891 CACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCT 170950 | ||| || || | || ||||| || | | | || ||||| ||||| || ||||| Sbjct 238322 CGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCCT 238263 Query 170951 TACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGG 171010 ||| || || || || | || || | |||| | || |||||||| | ||||| Sbjct 238262 TACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGG 238203 Query 171011 GAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGC 171063 ||||| | | | | || ||| | |||||||| ||| ||||| ||||| Sbjct 238202 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570152557833480