Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1128 98.7 9e-16 seq1118 96.9 3e-15 seq596 95.1 1e-14 seq347 95.1 1e-14 >seq1128 Length=278557 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| |||||| || | Sbjct 246359 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGC 246418 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| || || ||||| Sbjct 246419 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGATCAG 246478 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | || ||| ||||| ||||| || | | | || |||||||||| Sbjct 246479 CAGAGACTCATCTTCGCCGGAAAGCAGCTCGAGGACGGTCGTACTCTCGCCGATTATAAC 246538 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 246539 ATCCAGAAGGAATCAAC 246555 >seq1118 Length=308725 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| ||| | || || |||| || ||| | Sbjct 111550 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTCT 111491 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 111490 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 111431 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || ||||| | || || || ||||| ||||||| | | | | ||||||||| Sbjct 111430 CAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAAC 111371 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||||| || || || | || || || || || | || || ||| Sbjct 111370 ATTCAAAAGGAGTCCACCCTCCACTTGGTCCTACGACTCAGGGGTGGA 111323 >seq596 Length=631412 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| |||| || || |||| ||| | || || ||| | Sbjct 343171 CACAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTC 343230 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||| || | || ||| |||||| ||||| |||||||| || || || Sbjct 343231 CTCGGACACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATCCCGCCGGA 343290 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || | || || | || ||| || || |||||||| | || | | ||| || Sbjct 343291 CCAGCAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTA 343350 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || | ||| | ||||| || |||||||||||| Sbjct 343351 CAACATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGGA 343402 >seq347 Length=438793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | ||||| ||| | || || |||| || ||| | Sbjct 270819 ATGCAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCT 270760 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 270759 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 270700 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||| | || ||| |||||||| ||||| | | | | | ||||||||| Sbjct 270699 CAAAGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAAC 270640 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 270639 ATCCAAAAGGAGTCCAC 270623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429850553847585