Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1128 136 4e-27 seq339 118 1e-21 seq347 111 1e-19 seq596 102 8e-17 seq181 102 8e-17 seq1118 93.3 4e-14 >seq1128 Length=278557 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| | || | || |||||||| || |||||||| || Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| ||||||||||||||| ||||| |||| | | |||||||||||| ||| Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||||| | || | || ||| || ||| | Sbjct 246693 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 246634 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||||| || || ||||| || || || || || ||||||||| Sbjct 246633 TCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 246586 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 246358 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 246299 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| |||||||| || ||| |||| | |||||||||||||||||| Sbjct 246298 GAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGG 246239 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| ||| || ||| | | || | || ||| || ||| | Sbjct 246238 GATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCAC 246179 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| | ||| || ||||| |||||||| Sbjct 246178 CTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 246131 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||| || | || | ||| |||||||| |||||||||||||| Sbjct 247041 CCACCACGGAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 246982 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | ||||| | |||||| || || |||| || | |||||||||||||||| Sbjct 246981 AGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGG 246922 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || ||| ||| | | || | || || | |||||| | Sbjct 246921 ATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACC 246862 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 246861 TCCAAGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 >seq339 Length=880584 Score = 118 bits (130), Expect = 1e-21 Identities = 270/394 (69%), Gaps = 12/394 (3%) Strand=Plus/Minus Query 46085 TGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGA 46144 ||||||||||| || ||| | || ||||| || ||||||||||| |||| ||| || Sbjct 293352 TGCCGTGCGTGGCCAGGAAGGCGGATTGGGCCATCAAGTGGATCAA---CAGCTCCGAGA 293296 Query 46145 CTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTT 46204 | ||||||||| | || || |||||||| ||||| || |||| || || || || | Sbjct 293295 CCTTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCT 293236 Query 46205 TTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 | | |||| |||| | || | ||| ||||||| || || || || ||||| Sbjct 293235 TCTGCTCCATATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCTTCTCCAACG 293176 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTC 46324 || || | || || ||||| || |||| || |||||||| || || ||| || ||| Sbjct 293175 AGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTTGCGTGCCT-TA-TAT-ACTCTC 293119 Query 46325 GCGTGCACGA-CAAGCT-TGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGC 46382 || | || |||||| ||| || |||| | | || | ||||||||||||| Sbjct 293118 -TGTTGAGGAGCAAGCTGAGCG-AGGAGCGCGTGAGGGGTATAGTGAAGGAGGCGGTGGA 293061 Query 46383 CATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAA-CGCAC 46441 ||||| | ||||||| | | ||| ||||| | || | | || ||||| | || Sbjct 293060 GATTGAAAGGGAGTTTGTCTGTGACGCGCTGCCGGTCGCTTTAGTTGGGATGAATTGTAC 293001 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGA 46475 || ||| | | |||||||||||||| ||||| Sbjct 293000 -GTTGATGGCCCAGTACATCGAGTTTGTTGCGGA 292968 >seq347 Length=438793 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || || || | ||| ||||||||||| ||||| ||||| | ||||| | Sbjct 270605 CGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCG 270664 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || ||||| || ||| |||| || | |||||||| |||||||| ||||| ||| Sbjct 270665 TCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTG 270724 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || || | | ||| | |||| || | | Sbjct 270725 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATG 270784 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || || || |||||||| || ||||||||| Sbjct 270785 GTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCATG 270820 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | ||| | || |||||||| ||||| || ||||| Sbjct 269909 CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGCA 269968 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| ||||| |||| || | |||||| || | || Sbjct 269969 AGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGA 270028 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | ||||| | | || | || || | ||| | Sbjct 270029 ATCCCTTCCTTGTCC-TGAATCTTTGCTTTTACATTTTCAATGGTGTCCGAACTCTCAAC 270087 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || | |||||| || ||||||||||| Sbjct 270088 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 >seq596 Length=631412 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| | || ||| | ||| | ||||||||||| || |||||||| ||| | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || ||||| || || ||| |||| | || ||||||||||| ||| Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| || | | || | || || | |||||| | Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTT-TGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCAC 343223 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 343222 CTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq181 Length=541317 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | || ||||| | || | ||||||||||| || |||||||| ||| Sbjct 240881 GCCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 240822 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||| || || || || || ||| |||| | || || ||||| || || Sbjct 240821 GAGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGG 240762 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| |||||| ||| | | || | ||||| | ||| |||| Sbjct 240761 GATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTGTCGATGGTATCTGAGGATTCGAC 240702 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || ||||| ||||| ||||| ||||||||| Sbjct 240701 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATG 240653 >seq1118 Length=308725 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||| ||||||||||||||||| ||||| | ||||| Sbjct 111336 CGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCA 111395 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || || || || ||| |||| | | || ||||| |||||||| ||||| ||| Sbjct 111396 TCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTG 111455 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || || | | ||| | |||| || | | Sbjct 111456 TCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATG 111515 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||||| || || || ||||| || |||||||||||| Sbjct 111516 GTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCATG 111551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471916586090880