Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq596 113 4e-20 seq1128 95.1 1e-14 >seq596 Length=631412 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| | ||||| |||| ||| ||||| |||||||| || ||||||||||||||| Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| || | ||||| || || | || || || || |||||| || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || |||||| ||||| | | | | ||||| || |||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCT--TTCACGTTGTCAATGGTGTCCGAGGACTCCA 343224 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||| || || || || || ||||| || || ||||||||| || Sbjct 343223 CCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTGTG 343171 >seq1128 Length=278557 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||| | || Sbjct 246333 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 246274 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| ||| | || || ||||| || || Sbjct 246273 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTG 246214 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||||| | |||| || | ||||||||| || |||| Sbjct 246213 GC--CTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGG 246156 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| || || || || |||||||| Sbjct 246155 TCAAAGTCTTCACGAAGATCTGCAT 246131 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||| |||| || || || |||||||| || ||||||||||| || Sbjct 246814 CCCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGC 246755 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| ||||||| | || || || ||| | || |||| ||| |||||| || Sbjct 246754 AAGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGG 246695 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | || || ||||| || ||||| ||| || | | | | ||||||| | ||| Sbjct 246694 GATCCCTTCCTTGTCCTGGATTTTTGC--CTTGACGTTGTCGATGGTGTCGCTGCTCTCA 246637 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| || || || ||||| || || |||||||| |||||||| Sbjct 246636 ACCTCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405007492177930