Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5529 131 1e-25 seq1835 131 1e-25 seq3394 122 6e-23 seq89 122 6e-23 seq678 118 7e-22 seq6087 113 3e-20 seq926 113 3e-20 seq181 111 1e-19 seq560 109 4e-19 seq596 98.7 7e-16 seq1118 96.9 2e-15 seq7210 89.7 3e-13 seq431 87.8 1e-12 >seq5529 Length=76990 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 37894 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 37835 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 37834 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 37800 >seq1835 Length=198957 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 67263 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 67204 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 67203 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 67169 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 54054 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 53995 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 53994 GCCCGTATTTAGCCTT 53979 >seq3394 Length=132735 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || ||||| || Sbjct 120746 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTTGT 120805 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 120806 TAATCCATTCATGCGCGTCACTAATTAGATGATGA 120840 >seq89 Length=623066 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 |||| |||||||||||||||||||||||| ||||||||| |||| | |||||||| Sbjct 307422 AAGCTCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTTGGAATCTCGT 307363 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 307362 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 307328 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||| ||||||| ||||||||| ||||||||||| ||| |||||||| | Sbjct 305429 CTCTCTTTTCAAAGACCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTTTCGGTCTCTC 305370 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 305369 GCCCGTATTTAGCCTT 305354 >seq678 Length=338508 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || ||||||||| |||| || |||||||| Sbjct 70495 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAGTAGACAGGGACAGTGGGAATCTCGT 70436 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||||||||||||||| || Sbjct 70435 TAATCCATTCATGCGCGTCACTAATTAGATGAAGA 70401 >seq6087 Length=58568 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||| ||||||||||||||||| ||| ||||||||| |||| || |||||||| Sbjct 28372 AAACCCAATCCCTTGGCTGTGGTTTAGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 28431 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 28432 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 28466 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 12830 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 12889 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 12890 GCCCGTATTTAGCCTT 12905 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 30184 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 30243 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 30244 GCCCGTATTTAGCCTT 30259 >seq926 Length=1058432 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||||||||||||||||||||||| || ||||||||| |||| || |||||||| Sbjct 430416 AATCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGACAGGGACAGTGGGAATCTCGT 430475 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||| ||||||||||| ||||||| Sbjct 430476 TAATCCATTCATGCGTGTCACTAATTATATGACGA 430510 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 432410 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 432469 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 432470 GCCCGTATTTAGCCTT 432485 >seq181 Length=541317 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || ||||| || | | | || |||| || | ||||||||| || || Sbjct 240845 CTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAA 240786 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || ||||||||||| || | |||| |||||| ||||| |||||| |||||| || Sbjct 240785 GATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTT 240726 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || |||||| ||| || |||| || || || || ||||| | ||||||||| Sbjct 240725 GTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCAC 240666 Query 38306 GAATATCTGCATGTTT 38321 ||| ||||||||| || Sbjct 240665 GAAGATCTGCATGGTT 240650 >seq560 Length=1053901 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||| |||||||||||| ||||||||| | || || |||||||| Sbjct 154698 AAGCCGGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGACAAGGACAGTGGGAATCTCGT 154757 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||||| |||||| ||||||||||||||||||| Sbjct 154758 TAATCCATTCATGTGCGTCACTAATTAGATGAC 154790 >seq596 Length=631412 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||||||| | |||||||| ||| || || |||||| || || ||||| || | | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| | |||| || | ||||||||||| || || |||||||| || || | ||| Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || ||| ||||| || | | || || || || Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || ||||| | |||||||||||| |||||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1118 Length=308725 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| || | || | ||||| || || ||| |||||||||||| || |||| Sbjct 111320 CATT-CCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAAT 111378 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| | | || | || || | |||||| || || || || || | |||||| || | Sbjct 111379 CAGCAAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTG 111438 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||| |||||| || || ||| ||||| | | || || || | Sbjct 111439 GAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCT 111498 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || | || || ||||| || || | ||||||||| || ||||||||| Sbjct 111499 CAACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCATG 111551 >seq7210 Length=38368 Score = 89.7 bits (98), Expect = 3e-13 Identities = 76/94 (81%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||||||||| | |||||| |||| ||||||||| | || || |||||||| Sbjct 4011 AGCCCGTTCCCTTTGTTGTGGTCGCGCTCGATAGTAGACAAGGATAGTGGGCATCTCGTT 3952 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||| || ||||||||||||||| || Sbjct 3951 AATCCATTCATGTGCATCACTAATTAGATGATGA 3918 >seq431 Length=417629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||| | |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 62752 CTCTATTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 62811 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 62812 GCCCGTATTTAGCCTT 62827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334880632070117