Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq339 118 1e-21 >seq339 Length=880584 Score = 118 bits (130), Expect = 1e-21 Identities = 243/356 (68%), Gaps = 8/356 (2%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || ||||||||||| | ||| ||||| | | || |||||||| || |||||| Sbjct 293133 CACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGT 293192 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| || || ||||| || |||||||||||||| ||| | | | || || ||||| Sbjct 293193 CCTGGCATGAGACCCCGCTTCTTCAGCCAAAATATGGA-GCAGAAGCTCCCGGAGAAGAA 293251 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATG 32836 || ||||| || |||||||| | | ||||| | | ||| ||||| || Sbjct 293252 GATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGT--TG 293309 Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 |||||||| |||||||| |||||| | || || |||| ||||| || || | Sbjct 293310 -ATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTG 293368 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| || || | | || || | || || || | || ||||| ||||| Sbjct 293369 GAAGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACAT 293428 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 || || || ||||| || || || || || || ||||||||| | ||||||| Sbjct 293429 CTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGG 293484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633502842037200