Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1118 116 3e-21 seq347 105 6e-18 seq335 93.3 4e-14 seq1128 91.5 1e-13 seq4739 86.0 5e-12 >seq1118 Length=308725 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || ||| | ||||| | || || || ||| Sbjct 111094 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCT 111035 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| |||| | ||| ||||| || || || || || ||||| Sbjct 111034 GATACGATTGATAATGTGAAGGCAAAGATTCAA-GACAAGGAGGGTATCCCCCCAGACCA 110976 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || |||||||||| |||||||| | ||||||| |||||| | | ||| ||||| Sbjct 110975 ACAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAA 110916 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || || | ||||| Sbjct 110915 CATCCAGAAAGAATCCACCCTTCACCTCGTGCT 110883 Score = 116 bits (128), Expect = 3e-21 Identities = 147/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| |||||| | ||||| || | ||||| | || || || || Sbjct 111323 AATGCAAATATTTGTGAAGACTCTTACCGGCAAGACTATCACTTTGGAGGTTGAAAGTTC 111264 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| || || || || || ||| || ||| ||||| ||||| || ||||| ||| Sbjct 111263 TGATACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCCGAC 111206 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | |||||||| || ||||| | ||||||| |||||| | | || ||| Sbjct 111205 CAGCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGCACTCTTGCAGACTAC 111146 Query 25176 AATATTCAAAAAGAATCCAC 25195 ||||| ||||| |||||||| Sbjct 111145 AATATCCAAAAGGAATCCAC 111126 >seq347 Length=438793 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || |||||||| || ||| ||||||| | || || ||| || Sbjct 270135 ATGCAGATTTTTGTCAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAGAGTTCG 270076 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || | || ||||||| | ||| ||||| ||||||||||||| || Sbjct 270075 GACACCATTGAA--AATGTAAAAGCAAAGATTCAG-GACAAGGAAGGGATTCCACTAGAT 270019 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | || |||| |||||| | | ||||| Sbjct 270018 CAGCAGAGGTTGATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGCACTCTTGCAGATTAT 269959 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || || ||| | || || Sbjct 269958 AATATTCAGAAGGAGTCTACTCTGCATCTTGTTCT 269924 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || || | ||||| | || || || ||| Sbjct 270363 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTCT 270304 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| | || | ||| ||| ||| ||||| ||||| || || || ||||| Sbjct 270303 GACACGGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 270244 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||| |||||||| | ||||||| |||||| | | || ||||| Sbjct 270243 CAGAGGCTTATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACAAC 270184 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||||||||| || || | ||||| Sbjct 270183 ATCCAAAAAGAATCCACCCTTCACCTGGTGCT 270152 >seq335 Length=478728 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || || ||||| || ||| | | |||||||| || |||||||| ||| Sbjct 394739 GACAAAGAAGGTATCCCTCCTGATCAGCAGAGATTGATTTTTGCTGGAAAACAATTGGAA 394798 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || || | | || |||||||| ||||| || || || || || | ||| | Sbjct 394799 GATGGCCGAACCCTTGCTGACTACAATATCCAAAAGGAGTCGACACTTCACCTGGTGTTG 394858 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 394859 AGGCTTAGGGGAGGAA 394874 >seq1128 Length=278557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| |||| |||||| Sbjct 246131 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCAGC 246190 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| |||||||| || || ||||| Sbjct 246191 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 246250 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || || | ||||| | | ||| ||||| Sbjct 246251 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 246310 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 246311 ATCCAGAAGGAGTCCACACTCCA 246333 >seq4739 Length=93234 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 || || || ||||| ||||| | || || ||| |||||||| | || |||||| | | Sbjct 55466 ATACAGATTTTTGTCAAGACCCTTACTGGGAAAACCATCACATTAGAGGTGGAGAGTTTT 55525 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| | ||||| |||||| || || ||||| |||||||| || || Sbjct 55526 GACACTATTAACAATGTGAAGGCCAAAATCCAAGATAAGGAAGGCATTCCACCAGATCAG 55585 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||| | || || || | | | ||| || ||| | | ||||||||| Sbjct 55586 CAGAGACTCATATTTACTGGAAAGCAGCTTGCAAATGGTCCTACTCTTGCTGATTACAAT 55645 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| |||| || || || || || || Sbjct 55646 ATCCAAAAGGAATAGACCCTCCACTTTGTTCT 55677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433241879716205