Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq339 140 4e-28 seq1889 93.3 5e-14 seq5626 82.4 8e-11 seq762 82.4 8e-11 >seq339 Length=880584 Score = 140 bits (154), Expect = 4e-28 Identities = 406/612 (66%), Gaps = 15/612 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||| || | ||||||||| ||| || ||||||||||| ||||| | |||||| ||| Sbjct 293123 GTATATAAGGCACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGA 293182 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTAC 93200 ||| || | ||||| | || || || ||||| |||||||||| || |||| || || | Sbjct 293183 GAAGGTGAGTCCTGGCATGAGACCCCGCTTCTTCAGCCAAAATA-TGGAGCAGAAGCTCC 293241 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 | || || || || ||||||||| ||||| || || || | ||||| || | ||| Sbjct 293242 CGGAGAAGAAGATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGG 293301 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 | ||| ||||||| || | |||||||| || || | | || || | || | Sbjct 293302 A---GCTGTTGATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCT 293358 Query 93321 CGATAGCGTTAAATAGGTAAT-CTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 |||| |||| || ||| | || | | || || || ||||| || |||| | Sbjct 293359 CGATGGCGTGGAAGAGGCGGTGCTTG-ACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGG 293417 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 ||| ||||| || || |||| ||||| ||||| || ||||| |||||||| | Sbjct 293418 AGACTGTACATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGG 293477 Query 93440 GCTTCCGTGATCTGCA-CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 || || | || ||| | || | | ||| | | |||| || || ||| || || Sbjct 293478 GCCTCGGCGACCTGGATCTCGGTCATGAAA-CGGCCGGCGAGGTTCTCGAGGACGATGCC 293536 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAA 93557 ||||| || || || || || | || || || || || |||| || |||| Sbjct 293537 GTCGGAGGCGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAA 293596 Query 93558 GCTTATCCCAAT--CGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | | ||||| | ||| | || | || |||||||| || ||| | ||||| || || Sbjct 293597 GGCT-TCCCAGTGGCGGGT--GTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGA 293653 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 || || || || |||||||| ||||| || || | || || || || || ||| || Sbjct 293654 GGCCTCGGCCTTCTTGTACATCTCCCAGATTTCCGGGTACTGGATGGGGAACATGCAGAA 293713 Query 93676 ACGATTAGGGTT 93687 ||| | ||||| Sbjct 293714 ACGGTCCGGGTT 293725 >seq1889 Length=387938 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 11/111 (10%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 314820 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 314763 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371 |||||||||| || ||||| |||||| ||| |||| |||||||||| Sbjct 314762 GCGTGGGTTCAAATCCCACTTCTGACAGATTTTTAT-----TTTTTGTTGC 314717 >seq5626 Length=69956 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 57502 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 57445 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 57444 TTCAAATCCCACAGCTGTCAAA 57423 >seq762 Length=717997 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 357787 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 357730 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 357729 GCGTGGGTTCAAATCCCACTTCTGACA 357703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556747290886680