Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1118 136 3e-27 seq347 118 9e-22 seq181 104 2e-17 seq596 98.7 8e-16 seq4739 93.3 4e-14 >seq1118 Length=308725 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || ||||| ||||| | || || |||| | Sbjct 111094 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCT 111035 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || ||| |||||||||||||||||||| || || || ||| Sbjct 111034 GATACGATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCAA 110975 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||||||| | || ||| |||||| | |||| |||||| Sbjct 110974 CAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAAC 110915 Query 22399 ATTCAAAAAGAATCCACC 22416 || || |||||||||||| Sbjct 110914 ATCCAGAAAGAATCCACC 110897 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| |||||| | || || || || |||| ||||| || |||| | Sbjct 112008 AGATGCAGATCTTTGTAAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAAAGCT 111949 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | ||| || |||| || || || ||||||||||| || ||||| || | Sbjct 111948 CTGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACC 111889 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | || || ||||| || |||||| | |||||| ||||| | | || || | Sbjct 111888 AGCAAAGGCTGATCTTTGCTGGTAAACAGCTTGAGGATGGACGCACTCTGGCTGACTATA 111829 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||| ||||| |||||||| | || || ||| Sbjct 111828 ACATCCAAAAGGAATCCACACTTCACTTGGTT 111797 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || ||||| | ||||| || || || | | | Sbjct 111550 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTCT 111491 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || |||||||| || || || || || ||| Sbjct 111490 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 111431 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || || || ||||| | || ||| |||||| | | ||||| ||| Sbjct 111430 CAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAAC 111371 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || |||||| | || || || Sbjct 111370 ATTCAAAAGGAGTCCACCCTCCACTTGGT 111342 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||||||||||||||| || || ||||| |||||||||| || || | | Sbjct 110866 ATGCAGATTTTTGTTAAAACTTTGACTGGAAAAACTATCACTCTTGAGGTTGAGAGTTCG 110807 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| ||||| |||||||| || || ||||| || || Sbjct 110806 GACACCATTGATAATGTTAAGTCAAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 110747 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | |||||| || || | | ||||| || Sbjct 110746 CAGAGGTTGATCTTTGCGGGGAAGCAGCTGGAGGATGGGCGTACTCTTGCAGATTATAAT 110687 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 || || || || || || | ||| | ||| | || |||| || ||||| Sbjct 110686 ATCCAGAAGGAGTCTACTCTGCATCTTGTTCTTCGCCTGCGTGGTGGTTT 110637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| |||||| | || || || || |||| ||||| || |||| | | Sbjct 111779 GATGCAGATCTTTGTAAAAACTCTCACTGGCAAGACCATCACGCTTGAGGTTGAAAGCTC 111720 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | ||| || | || || || || ||||||||||| || ||||| || || Sbjct 111719 TGACACCATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCA 111660 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || || || || || || | || ||| |||||| | | || || || Sbjct 111659 GCAAAGGCTGATCTTCGCTGGTAAGCAACTTGAAGATGGCCGCACTCTTGCTGACTATAA 111600 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| || || || ||||| | || || ||| | || || Sbjct 111599 CATCCAGAAGGAGTCCACACTGCACTTGGTTCTCCGTTT 111561 >seq347 Length=438793 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| ||||| | || || || || ||||| | || || |||| | Sbjct 270363 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTCT 270304 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || || | || ||| || ||||||||||| ||||| || || || || Sbjct 270303 GACACGGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 270244 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| ||||||||| | || ||| |||||| | | || |||||| Sbjct 270243 CAGAGGCTTATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACAAC 270184 Query 22399 ATTCAAAAAGAATCCACC 22416 || ||||||||||||||| Sbjct 270183 ATCCAAAAAGAATCCACC 270166 >seq181 Length=541317 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || ||| | || || || || ||| || | Sbjct 240654 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCCTCA 240713 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || |||||| ||||||||||| || || ||||| || ||| Sbjct 240714 GATACCATCGACAACGTGAAGGCAAAAATCCAAGACAAGGAAGGCATCCCACCAGACCAA 240773 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || || || ||||| | || || ||| || || |||| |||||| Sbjct 240774 CAACGCCTCATCTTCGCTGGAAAACAACTTGAAGACGGCCGGACTCTCGCCGACTACAAC 240833 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 240834 ATCCAGAAGGAGTCGAC 240850 >seq596 Length=631412 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || ||| |||| || || ||||| || | Sbjct 343175 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTCG 343234 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | ||| ||| || ||||||||||| || || || || || || Sbjct 343235 GACACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCAG 343294 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || ||||| |||||| | || || | || | |||| |||||| Sbjct 343295 CAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTACAAC 343354 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | || ||| | ||| | ||||| Sbjct 343355 ATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGG 343401 >seq4739 Length=93234 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||| || || ||||| || | | | | ||||| || ||||| |||| || ||| | Sbjct 54780 AGATTCAGATGTTTGTGAAGAGTCTGATGGGTAAGACTATCACTTTTGAGGTTAAAAGCT 54839 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | |||||| | || || | ||| || || ||||||||||| || || || || |||| Sbjct 54840 CTGATACCATTGAGAATGTGAAATCTAAGATCCAAGACAAGGAAGGGATCCCTCCAGATC 54899 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | || || ||||| ||||||| | ||||| ||| || | | || |||| Sbjct 54900 AGCAGAGGCTCATCTTTGCTAGCAAACAACTTAAGGATGGCCGAACTCTGGCAGACTACA 54959 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGT 22427 | || || ||||| |||||| | ||||| || Sbjct 54960 ATATCCAGAAAGAGTCCACCCTCCATTTGGT 54990 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || |||||||| ||||| | || || || | | Sbjct 55010 ATGCAGATCTTTGTGAAAACCCTTACTGGTAAAACCATCACTTTGGATGTTGAGAGTTCT 55069 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || ||| || || || ||||||||||| ||||| || || Sbjct 55070 GAAACTATTGACAATGTGAAGGCAAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 55129 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| |||||| | || ||| | || ||| || | | | ||||| ||| Sbjct 55130 CAGAGGCTTATCTTTGCCAGTAAGCAGCTCGAAGATGGTCGTATTCTTGCTGATTATAAC 55189 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || || | || || ||||| || Sbjct 55190 ATTCAGAAGGAGTCAACACTTCACTTGGTTTTTCG 55224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419644582601455