Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1118 123 2e-23 seq181 118 9e-22 seq347 96.9 3e-15 seq1128 91.5 1e-13 >seq1118 Length=308725 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||||||||| ||||| | ||| || ||||||||||||||||||| Sbjct 111354 GTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCAAGTTGTTTACCA 111413 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | |||||||| ||||| |||||||| ||||| ||||| || Sbjct 111414 GCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 111473 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | || || || | || | |||||||| || || ||| Sbjct 111474 ACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTT 111533 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||||||||||||| Sbjct 111534 TTCACAAAAATCTGCATG 111551 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| ||||| ||||| || || || ||| || ||| || Sbjct 111797 AACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTC 111856 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| ||||||||||| |||| || | || ||||| || || || || || ||||| Sbjct 111857 AAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTG 111916 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | |||| |||||| | | |||||| || | ||| | || || Sbjct 111917 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTT 111976 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||||||||||||| |||||||| Sbjct 111977 TCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || || || ||||| || || | ||| || |||||| Sbjct 111569 AACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCTTC 111628 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||| ||||||||| |||| || | || ||||| || || || || || ||||| Sbjct 111629 AAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTG 111688 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | || | |||||| | | ||| || || | || | || || Sbjct 111689 GATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGCGTGATGGTCTT 111748 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || |||||||||||||| |||||||| Sbjct 111749 GCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 114143 CCATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAAT 114202 ||| ||| ||| || ||||| || | | ||| | ||| | ||||| || || || || Sbjct 110629 CCACTTAGAAA--CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGAT 110686 Query 114203 GTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTG 114262 || ||||| | |||||| ||| || || || || || || |||| | | ||| Sbjct 110687 ATTATAATCTGCAAGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTG 110746 Query 114263 TTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 ||||| || || || ||||| ||||| ||||||| || | | |||| |||||| Sbjct 110747 CTGGTCTGGTGGGATCCCTTCCTTGTCCTGAATCTTTGACTTAACATTATCAATGGTGTC 110806 Query 114323 GGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || | || | ||||| || |||| |||||| |||||||||||||| Sbjct 110807 CGAACTCTCAACCTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 >seq181 Length=541317 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||| | ||| || |||||||||||||| || Sbjct 240851 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGTTTTCC 240792 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| ||||||| || |||||||| || || |||||||| ||||| || ||| || Sbjct 240791 AGCGAAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTTGCCTT 240732 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||| || | ||||||||| || | ||| | ||| || || || || || Sbjct 240731 CACGTTGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGT 240672 Query 114365 TTTTACAAAAATCTGCATGG 114384 ||| || || |||||||||| Sbjct 240671 TTTCACGAAGATCTGCATGG 240652 >seq347 Length=438793 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 114143 CCATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAAT 114202 ||| ||| ||| || ||||| || | | ||| | ||| | ||||| || || ||||| Sbjct 269898 CCACTTAGAAA--CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAAT 269955 Query 114203 GTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTG 114262 || ||||| | ||| || ||| || || || || || || |||| | | ||| Sbjct 269956 ATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTG 270015 Query 114263 TTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTC 114322 || || | ||||| ||||| ||||| ||||||| ||||| | ||||| |||||| Sbjct 270016 CTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATTTTCAATGGTGTC 270075 Query 114323 GGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || | ||| | ||||| || |||| |||||| |||||||||||||| Sbjct 270076 CGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||||||||| |||||||| || | ||| || ||||||||| ||||| || Sbjct 270167 GTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGTTTGCCT 270226 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| ||||| || ||||| ||||| |||||| || Sbjct 270227 GCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTA 270286 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | ||| || || | || | || ||||| || || ||| Sbjct 270287 ACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGTAAGGGTT 270346 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| || |||||| Sbjct 270347 TTCACAAAGATTTGCATG 270364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| ||||| ||||| | ||| || ||||||||||| ||||| Sbjct 270623 GTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCGTCTTCAAGTTGCTTACCG 270682 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| | | || ||||| ||||| |||||||| ||||| ||||| || Sbjct 270683 GCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 270742 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | | || || || | || | |||||||| || || ||| Sbjct 270743 ACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTT 270802 Query 114366 TTTACAAAAATCTGCATG 114383 |||||||| ||||||||| Sbjct 270803 TTTACAAAGATCTGCATG 270820 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || || || ||||| || || | ||| || ||| || Sbjct 270838 AACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTC 270897 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| ||||||||||| |||| || | || || || || || || || || || || Sbjct 270898 AAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATCCTG 270957 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | ||||| ||||| | | |||||| || | ||| | || || Sbjct 270958 GATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTT 271017 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || |||||||||||||| |||||||| Sbjct 271018 GCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 >seq1128 Length=278557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | || | || | || || || || || |||||||| ||| Sbjct 246360 ATGCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCG 246301 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || || ||| ||||||||||||| ||||||||| Sbjct 246300 GCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 246241 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||| || | | || | ||||||| || || Sbjct 246240 GGGATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCC 246181 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || |||||||||| ||| || || || |||||||| Sbjct 246180 ACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 246131 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || | || | ||||| || || |||||||||||||| Sbjct 247042 ACCACCACGGAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGC 246983 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || | ||| || | || || ||||| |||| | | ||| ||||||||||| Sbjct 246982 AAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGG 246923 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || ||||| ||||| |||||| || | | || | |||||| | ||| || || Sbjct 246922 GATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAGGACTCCAC 246863 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || ||||| || || || || || || |||||||| Sbjct 246862 CTCCAAGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420050901832884