Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq339 262 7e-65 >seq339 Length=880584 Score = 262 bits (290), Expect = 7e-65 Identities = 460/663 (69%), Gaps = 14/663 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| ||| |||||| |||||||||||||| || |||| |||||||||| Sbjct 293698 ATCCAGTACCCGGAAATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCC 293639 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||| | || || || ||||||| | |||||| | | | |||| | Sbjct 293638 GAGGAGGTCGATCTCTCCCAGGACACCCGCCACTGGGAAGCCTTAACCCCCGACGAGACC 293579 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 ||| || |||| || ||||||||||||||||| |||||||| ||| |||||| Sbjct 293578 CACTTCATCTCTCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAAC 293519 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || ||| | | ||||||| ||| | ||| | ||||| ||| ||||||||||||| Sbjct 293518 CTCGCCGGCCGTTTCATGACCGAGATCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTC 293459 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||||| || || |||||| | ||||| ||| ||||| |||||| | || |||||| Sbjct 293458 CAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCTCCTGCTCGAGACCTACATC 293399 Query 42585 CTGGA-TC--CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| || ||| ||| || | || ||| | ||||| |||||| |||| ||| | Sbjct 293398 AAGGACTCAGAGGTCAAGC---ACCGCCTCTTCCACGCCATCGAGACGGTGCCGTGCGTG 293342 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 | ||||||||| ||||| |||| |||||| | || |||| || |||| |||| Sbjct 293341 GCCAGGAAGGCGGATTGGGCCATCAAGTGGATCAACAGCTCCGA---GACCTTCGCCGAG 293285 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 ||| | || |||||| | ||| || || ||||||||||| || |||| |||||| Sbjct 293284 AGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCTCCGGGAGCTTCTGCTCCATA 293225 Query 42762 TTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAG 42820 || ||||| ||| || || ||| ||||| |||||||||||||| ||||| | | Sbjct 293224 TTTTGGCTGAAGAAG-CGGGGTCTCATGCCAGGACTCACCTTCTCCAACGAGTTGGTGTC 293166 Query 42821 CAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCA 42880 | ||||| || |||| | || ||||| ||||| | | ||| | | ||| Sbjct 293165 ACGTGACGAAGGTTTGCACTGCGATTTTGCGTGCCTTATATACTC---TCTGTTGAGGAG 293109 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||||| ||||||| || ||| || | | |||||| |||||||| || | ||| Sbjct 293108 CAAGCTGAGCGAGGAGCGCGTGAGGGGTATAGTGAAGGAGGCGGTGGAGATTGAAAGGGA 293049 Query 42941 GTT 42943 ||| Sbjct 293048 GTT 293046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944146708258320