Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq181 158 3e-33 seq1128 149 1e-30 seq1118 120 7e-22 seq596 118 3e-21 seq347 105 2e-17 seq5626 100 7e-16 >seq181 Length=541317 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || ||||| || ||||||||| Sbjct 240880 CCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 240821 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||||||||| |||||||| || || ||||| |||| Sbjct 240820 AGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGG 240761 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || |||||||| || |||||||| || || | ||| ||||| || Sbjct 240760 ATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTGTCGATGGTATCTGAGGATTCGACC 240701 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||||||||| || || || || ||||| |||||||| Sbjct 240700 TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 240654 >seq1128 Length=278557 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || ||||| || | ||| || || ||||| || |||| Sbjct 246361 CATG-CCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGT 246303 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| ||||| ||||| || | || ||||| |||||||| |||||||| || Sbjct 246302 CGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCG 246243 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || |||||||| || || || ||||| || || | ||||| | Sbjct 246242 GAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGCTGCTCT 246183 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| ||||||| |||||| ||||| |||||||| Sbjct 246182 CCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCACGAAGATCTGCAT 246131 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || || || | || ||| || ||||| ||||| | Sbjct 246589 CATG-CCACCACGGAGGCGAAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAAT 246531 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||||||| || || ||||| || | || ||||| |||||||| || | ||| ||| Sbjct 246530 CGGCGAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCG 246471 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| ||||| || |||||||| || || || ||||| || || | ||||| | Sbjct 246470 GTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCT 246411 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 246410 CGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 246359 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| || || ||||| ||||| |||| || || ||||| ||| Sbjct 246777 TCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAG 246718 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || |||||| ||||| || ||||||||||| || || ||||| Sbjct 246717 ATGAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTG 246658 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| || || || || || |||||||| ||||| || |||||||| Sbjct 246657 TCGATGGTGTCGCTGCTCTCAACCTCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACA 246598 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 246597 AAGATCTGCAT 246587 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || || || || || || || || || Sbjct 247041 CCACCACGGAGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 246982 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || || || || || || ||||||| | ||| || ||| Sbjct 246981 AGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGG 246922 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || ||||| |||||||| || || | || || || || Sbjct 246921 ATCCCTTCCTTGTCCTGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACC 246862 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||| |||||||||||||| Sbjct 246861 TCCAAGGTGATGGTCTTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 >seq1118 Length=308725 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | || | ||| || | || | ||| ||| ||||||||||| |||| Sbjct 111092 CATG-CCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGT 111150 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || ||||| | ||||| ||||| || |||| | ||| || Sbjct 111151 CTGCAAGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGG 111210 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||||||| || |||||||| || || || || || || || | ||| || Sbjct 111211 GTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTT 111270 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || | ||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 111271 CAACCTCCAAAGTGATAGTCTTGCCGGTAAGAGTCTTCACAAATATTTGCATT 111323 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| || || ||||| || ||||| | ||| || || |||||| Sbjct 111588 TCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAG 111647 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || || |||||| || || || |||||||| || || ||||| || Sbjct 111648 ATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 111707 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| ||| || || |||||||| ||||| || || ||||| || Sbjct 111708 TCGATGGTGTCAGAGCT---TTCAACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTT 111764 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 111765 ACAAAGATCTGCAT 111778 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || ||||| |||| ||| |||||| ||||| || |||||||| Sbjct 110868 CCACCGCGGAGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCA 110927 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| | ||||| ||||| || || || | |||||| ||| Sbjct 110928 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTG---GTCTGGG 110984 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || || || || || ||||| || || || | ||| ||| Sbjct 110985 GGGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCA 111044 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| || || || || || || || || || || ||||| Sbjct 111045 ACCTCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 111094 Score = 100 bits (110), Expect = 7e-16 Identities = 164/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||||| || || | || | ||| || ||||| || ||||| || || Sbjct 111323 TCCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGC 111382 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| || ||||| | |||||| || ||||||||||| | ||||| ||| Sbjct 111383 AAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTG---GTCTGG 111439 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 ||||| ||||| || |||||||| || || || || || || || | || |||| Sbjct 111440 AGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC-- 111497 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || || || || || || || || || || || |||||||| Sbjct 111498 -TCAACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 >seq596 Length=631412 Score = 118 bits (130), Expect = 3e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||| | ||| || || ||||| || |||||||| | || | |||||||| Sbjct 343383 ACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCTACCGTCTTCG 343324 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | |||||||| |||||||| || || || || ||||| ||||| || || ||| Sbjct 343323 AGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGGATGCCTTCCTTGTCTTGG 343264 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || ||||||||||| || || | || || || || || || |||||||||||| Sbjct 343263 ATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACCTCCAGGGTGATCGTCTTC 343204 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || || || ||||| ||||||||| || Sbjct 343203 CCCGTTAGGGTTTTCACGAAGATCTGCATTGTG 343171 >seq347 Length=438793 Score = 105 bits (116), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| ||||| || || || || || ||||| | ||||| ||||| || Sbjct 270400 TTCCTTTTGGATATTGTAGTCCGCAAGGGTACGGCCATCTTCAAGCTGTTTACCTGCAAA 270459 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||| || ||||||||||| || |||||||| || || || || || Sbjct 270460 AATCAACCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 270519 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| ||| ||||| | ||||| ||||| || || |||||||| || Sbjct 270520 GTCAATGGTATCAGAACTTTCAACTTCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCAC 270579 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 270580 AAAGATTTGCATT 270592 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || |||| ||| |||||||||||| || ||||| || Sbjct 270137 CCACCGCGGAGACGGAGCACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCA 270196 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| | ||||| ||||| ||||| || | ||| || ||| Sbjct 270197 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTG---GTCTGGA 270253 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| ||||| || || ||||| || || || || || || | | || ||| Sbjct 270254 GGGATACCTTCCTTGTCTTGGATCTTTGCCTTAACATTATCAACCGTGTCAGAACTTTCA 270313 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || || || || || || || || ||||| Sbjct 270314 ACCTCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 270363 Score = 89.7 bits (98), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| || || ||||| || || || | ||||| || || ||| Sbjct 270857 TCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAG 270916 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | || ||| |||||| || || ||||||||||| || || || || || Sbjct 270917 ATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATCCTGGATCTTGGCCTTGACATTG 270976 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || | | || ||| ||| || || || ||||| ||||| || || ||||| || Sbjct 270977 TCAACTGTGTCAGAGCT---TTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTT 271033 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 271034 ACAAAGATCTGCAT 271047 >seq5626 Length=69956 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| ||||||||||| || || || | |||||||| ||||| || Sbjct 51553 CCTTCCTTGTCCTGGATCTTCGCTTTCACATTGTCGATCGTGTCGCTCGACTCTACCTCT 51494 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || |||||||| || || || || ||||||||||||||| Sbjct 51493 AGGGTTATTGTCTTCCCTGTAAGGGTTTTCACGAATATCTGCATT 51449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179407930751146