Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq339 102 1e-16 seq182 96.9 4e-15 seq306 87.8 2e-12 >seq339 Length=880584 Score = 102 bits (112), Expect = 1e-16 Identities = 169/242 (70%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| | ||| |||||||| || | | || || |||||| |||||| Sbjct 293136 GCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCT 293195 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||||||||||||||||| ||| || || | || || || ||||||||||| Sbjct 293196 GGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATC 293255 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAAC 126226 || ||||| || || || || | || | ||| || |||| | || ||| | | Sbjct 293256 CCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGG-TCTCG--GAGCTGTTGATC 293312 Query 126227 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 126286 ||||| || ||||| | |||||| | | | ||||| || |||| ||| || | ||| Sbjct 293313 CACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGAAG 293372 Query 126287 AG 126288 || Sbjct 293373 AG 293374 >seq182 Length=789423 Score = 96.9 bits (106), Expect = 4e-15 Identities = 275/416 (66%), Gaps = 10/416 (2%) Strand=Plus/Plus Query 10819 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 10878 |||||| || ||| | ||| || || || || |||| || || || | ||||| Sbjct 233570 GTCAAGAATGTCAGCCCTGTTAGTTGCTGCAATAACAATAATACCAGTATTACCCTCAAA 233629 Query 10879 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCAT 10938 |||||||| || |||| || || || | ||| ||||| | ||||||||| | Sbjct 233630 ACCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCC--- 233686 Query 10939 ACCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 |||| || | | | ||| ||||| || ||||||||||| | || || ||||| Sbjct 233687 ACCAATTCCAGTTCCTCTTTGTCGTCCGACAGCATCAATTTCATCCACAAATACAATACA 233746 Query 10996 CGGTTGATTTTC-ACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || || | ||| ||| | ||| |||||||| |||||| ||||||| Sbjct 233747 AGGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCCA 233805 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 11113 |||||||||| ||||| | || | | | || | || || || || | |||||| Sbjct 233806 CAAACATTTCAACAAACTCGGAACCTG-AGATGGAGAAAAATGGAACACCAGCTTCACCA 233864 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCA 11173 || || ||| ||| || || |||||||| || || || || | ||||| |||| Sbjct 233865 GCAATTGCTTTGGCTAGAAGAGTCTTCCCAGTTCCCGGAGGGCCAACAAGAAGAACACCT 233924 Query 11174 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCAC 11229 ||| || | ||| ||| | || | | |||||||| | || | || ||||| Sbjct 233925 TTTGGAATGCGGGCTCCAATAGCAGTGAACCGCTCAGGCTTCTTCAAAAACTCCAC 233980 >seq306 Length=475288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/282 (67%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| |||||||| || ||||| | |||||||| || || || | ||||||||| | Sbjct 94762 AAATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCC 94703 Query 10936 -CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 | || | || || | | ||| | || ||||| |||||||||||||| || || || | Sbjct 94702 TCCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGC 94644 Query 10995 ACGG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGAC 11049 | || | ||||| ||| ||||| | ||| | |||||| || || || Sbjct 94643 AAGGAGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTCGATGCCCCTAC 94589 Query 11050 ACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTC 11109 |||||||||| |||||||| | | |||| ||| || || || || || ||| Sbjct 94588 CCCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGAGAAAAACGGCACCCCGGCTTC 94529 Query 11110 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || | || || || || ||||||||||| || || || Sbjct 94528 TCCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGG 94487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597231836935560