Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1128 118 1e-21 seq1118 118 1e-21 seq347 111 2e-19 >seq1128 Length=278557 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| || | ||| |||||| || || ||||| || || || || ||| | Sbjct 246802 ACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCC 246743 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| ||||||||||| || || || ||||| | ||||||||| | ||| | | ||||| Sbjct 246742 GTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTT 246683 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||||||| |||| ||| | | | |||||||| || || || | || | Sbjct 246682 GTCCTGGATTTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCAACCTCCAGGGTAA 246624 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || ||||| || || ||||| |||||||| ||||| Sbjct 246623 TCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 104 bits (114), Expect = 3e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42011 TGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACC 42070 |||| |||||| || || ||||| || || || || || |||| || |||||||| || Sbjct 246328 TGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCC 246269 Query 42071 AGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTT 42130 ||||| ||||| ||||||||||| | || | | ||||||||| || | || | | Sbjct 246268 GGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCC-TGGATCTTGGCCT 246210 Query 42131 GAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCG 42189 | ||| | | | |||||||| ||||| |||| |||||||| ||||| || | | Sbjct 246209 TAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAG 246150 Query 42190 TCTTTACAAAGATTTGCAT 42208 |||| || ||||| ||||| Sbjct 246149 TCTTCACGAAGATCTGCAT 246131 >seq1118 Length=308725 Score = 118 bits (130), Expect = 1e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || |||||||| | ||||| |||| |||| |||||| || || || || ||||| Sbjct 111552 CCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 111611 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || || |||||||||||||| || || | |||||||| | ||| Sbjct 111612 AGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 111671 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||||||| ||| || || | | | | ||||| ||| ||| Sbjct 111672 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCT---TTCA 111728 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||||||| ||||| || || || ||||||||||| ||||| Sbjct 111729 ACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | ||||| || | |||| |||||||| || || || |||||| Sbjct 111780 CCACCCCTGAGACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCC 111839 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| |||||||| || || || | |||||||| | ||| Sbjct 111840 AGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 111899 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||||||| ||| || |||| | | | ||||| ||| ||| Sbjct 111900 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCT---TTCG 111956 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| || || || || || ||||||||||| ||||| Sbjct 111957 ACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | ||||| ||||| ||| |||||||| |||||||| || || Sbjct 111096 CCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCA 111155 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| ||||| || || || | | ||||||||||| ||| Sbjct 111156 AGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGG 111215 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||||||| ||| || |||| | | | || || ||| || Sbjct 111216 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACC 111275 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || ||||| || || ||||| ||||| ||||||||| Sbjct 111276 TCCAAAGTGATAGTCTTGCCGGTAAGAGTCTTCACAAATATTTGCATT 111323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||||||||| || |||||||| ||||| || | || || Sbjct 111342 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCA 111401 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || || ||||||||||| || || | || ||||| | || | || ||||||||| | Sbjct 111402 AGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 111461 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || || |||| | | | ||||| |||| || || |||| || |||||| Sbjct 111462 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTC---TCAACCTCGAGAGTTATGGTT 111518 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || || ||||| || ||||| Sbjct 111519 TTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 >seq347 Length=438793 Score = 111 bits (122), Expect = 2e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| || | ||| ||||||||| || || |||||||| ||||| || || Sbjct 270605 CGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCG 270664 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || |||||||| ||||| || | | |||||||| | || | || |||||| Sbjct 270665 TCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTG 270724 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTG 42170 ||| ||| || |||| | | | ||||| |||| || || |||| ||| Sbjct 270725 TCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTC---TCAACCTCGAGAGTG 270781 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||| || || || ||||||||||| ||||| Sbjct 270782 ATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||| | ||||| || | |||| |||||| || || || || ||||| Sbjct 270821 CCACCCCTGAGACGGAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 270880 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || ||||| |||||||| || || || | ||||| || | ||| Sbjct 270881 AGAGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGG 270940 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||| ||| ||| || |||| | | || ||||| ||| ||| Sbjct 270941 ATCCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCT---TTCG 270997 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | |||||||| ||||| || || || ||||||||||| ||||| Sbjct 270998 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543102072860880