Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq347 136 4e-27 seq1128 122 9e-23 seq1118 118 1e-21 >seq347 Length=438793 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || |||| || ||||||||||| |||||||| || || Sbjct 270136 ACCACCGCGGAGACGGAGCACCAGGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGC 270195 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||||||||| ||||| ||| | || |||| ||||||||| ||||| Sbjct 270196 AAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGG 270255 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || ||| ||| ||| || || || ||| || || Sbjct 270256 GATACCTTCCTTGTCTTGGATCTTTGCCTTAACATTATCAACCGTGTCAGAACTTTCAAC 270315 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | |||||||| || | ||||| || || |||||||| Sbjct 270316 CTCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 270363 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| || | || ||||| ||||| || ||||| || || | ||| || | || Sbjct 270379 AAGAACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCAAGGGTACGGCCATC 270438 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||| || || ||| |||| | || ||||||||||||||| |||||||| || || Sbjct 270439 TTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTC 270498 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | |||||| || ||||| | ||| | || Sbjct 270499 CTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACTTCCAAAGTGATAGT 270558 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| || | ||| || || || ||||||||| Sbjct 270559 CTTGCCAGTAAGAGTCTTCACAAAGATTTGCATT 270592 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||| | || || || || ||||| || |||||||| Sbjct 269908 ACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGC 269967 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || |||||||| || ||| | || | || |||||| || | || Sbjct 269968 AAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGG 270027 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || ||| |||||| || | || || || || Sbjct 270028 AATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATTTTCAATGGTGTCCGAACTCTCAAC 270087 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || ||||||||||| || ||||| ||||| Sbjct 270088 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 >seq1128 Length=278557 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || |||| |||||| |||| || |||||||| ||| Sbjct 246327 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCG 246268 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||| ||||||||||| ||||| || ||||| || || || || || ||| Sbjct 246267 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTA 246208 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | | ||||| || | || | |||||||||||||||||| Sbjct 246207 ACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTC 246148 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 246147 TTCACGAAGATCTGCAT 246131 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| ||||| | ||||||| |||| Sbjct 246798 AGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCC 246739 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | ||||||| ||||||||| || || || ||||| || || Sbjct 246738 TCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCC 246679 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || |||||| ||| || || | || || | | || || || | || | ||| Sbjct 246678 TGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACCTCCAGGGTAATCGTC 246619 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || || || || ||||| Sbjct 246618 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || ||||| || || ||||| ||||| |||| || || |||| Sbjct 246571 AAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTC 246512 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || |||||||| ||||| | ||||| | |||||| || || || || ||||| || || Sbjct 246511 CTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTC 246452 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | | || || || | || | ||| Sbjct 246451 CTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGT 246392 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||| | || || ||||| || ||||| Sbjct 246391 CTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 246359 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || |||||||||||||| || | ||| | | || Sbjct 247026 AGGACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCC 246967 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || ||| | || | || ||||||||| ||||| || ||||| || || Sbjct 246966 TCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCC 246907 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || ||||| || | || | |||| Sbjct 246906 TGAATCTTCGCCTTCACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTC 246847 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| || ||||| Sbjct 246846 TTGCCTGTGAGGGTCTTCACGAATATCTGCAT 246815 >seq1118 Length=308725 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || |||| || |||||||| || |||||||| || || Sbjct 110867 ACCACCGCGGAGACGGAGCACGAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGC 110926 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||||||||| ||||| ||| |||| |||| ||| ||||| || || Sbjct 110927 AAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGG 110986 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || ||| ||| ||| || | |||||| || || Sbjct 110987 GATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATCGTATCAGAACTTTCAAC 111046 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | || ||||| || | ||||| || || |||||||| Sbjct 111047 CTCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACAAAGATTTGCAT 111094 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| || ||||| ||||| | ||||| | ||||||||||| || || Sbjct 111126 GTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTGCGGCCATCTTCAAGCTGTTTACCT 111185 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| |||| | || |||||||||||| || |||||||| || || || || || ||| Sbjct 111186 GCAAAAATCAACCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 111245 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | |||||| || || || | ||| | ||||||||||| | ||| Sbjct 111246 ACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTGATAGTCTTGCCGGTAAGAGTC 111305 Query 64427 TTTACGAAAATTTGCATT 64444 || || || ||||||||| Sbjct 111306 TTCACAAATATTTGCATT 111323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || ||||| | || || || || || || || |||||||| Sbjct 110639 ACCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGC 110698 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || ||| | || || |||||||| || ||| | || | || ||||||||| || || Sbjct 110699 AAGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGG 110758 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || ||| ||| ||| || | || || || || Sbjct 110759 GATCCCTTCCTTGTCCTGAATCTTTGACTTAACATTATCAATGGTGTCCGAACTCTCAAC 110818 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | || || || ||||||||||| || ||||| ||||| Sbjct 110819 CTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||||||||| ||||| || | ||||| | |||||||| || || || Sbjct 111354 GTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCAAGTTGTTTACCA 111413 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| || ||||| ||||| || ||||| || || || || || ||| Sbjct 111414 GCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTG 111473 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || ||| | || || || | ||||| ||| ||||| || | ||| Sbjct 111474 ACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTT 111533 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 111534 TTCACAAAAATCTGCAT 111550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499542953653080