Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq596 116 4e-21 seq1128 109 5e-19 seq339 109 5e-19 seq1118 104 2e-17 seq347 96.9 3e-15 seq181 96.9 3e-15 seq4739 86.0 6e-12 >seq596 Length=631412 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||| | ||| || | ||| | | |||||||| || |||||||||||| | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||| ||||| ||||| |||| |||| || || || |||||||| || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| ||| | | || | |||||| | ||||||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||| || || || || ||||| || || |||||||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq1128 Length=278557 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 246324 GACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCG 246265 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| |||||||| ||||||||||| || ||||| ||||| ||| || | |||| Sbjct 246264 AAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTG-GCCTTAAC 246206 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||||||| | ||||||||||| || | || || || |||| ||| | Sbjct 246205 GTTGT-CGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCT 246147 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 246146 TCACGAAGATCTGCAT 246131 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || | || | | |||||||| || ||||||||||| Sbjct 246813 CCACCACGCAGACGCAGCACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCA 246754 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| |||||| || || || || | | |||| || | ||| |||||||| || Sbjct 246753 AGGGTGCGCCCGTCCTCTAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 246694 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||||||| || | | || | ||||||| | ||| ||| Sbjct 246693 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACC 246634 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||| || || || || || || ||||| ||||||||| Sbjct 246633 TCCAGGGTAATCGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCATG 246586 >seq339 Length=880584 Score = 109 bits (120), Expect = 5e-19 Identities = 344/523 (66%), Gaps = 10/523 (2%) Strand=Plus/Minus Query 52318 TCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCG 52377 ||||| ||||||||||| || ||||| | ||||| || ||||||||| | ||| Sbjct 293361 TCGAGACGGTGCCGTGCGTGGCCAGGAAGGCGGATTGGGCCATCAAGTGGATCAACAGCT 293302 Query 52378 ACACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGttttttt 52437 ||| || | |||||| | || || ||||| || || || || | || || | Sbjct 293301 ---CCGAGACCTTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAAGGGATCTTCTTCT 293245 Query 52438 CCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGT 52497 |||| ||||| | |||| |||| | || | | || | ||||| || || || | Sbjct 293244 CCGGGAGCTTCTGCTCCATATTTTGGCTGAAGAAGCGGGGTCTCATGCCAGGACTCACCT 293185 Query 52498 TCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACT 52557 || |||||||||| | || || |||||||| ||||| || ||||||||||| || | Sbjct 293184 TCTCCAACGAGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTTGCGTGCCT-TA-T 293127 Query 52558 ACAAGACGCGCGTGACCGAAAAATTGGATTCGGA-CACGATCCTGAGCATGTTCAAGGAG 52616 | | | | ||| || || ||| | || | | | || | |||||| Sbjct 293126 A-TACTCTCTGTTGAGGAGCAAGCTGAGCGAGGAGCGCG-TGAGGGGTATAGTGAAGGAG 293069 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 ||||||| || |||| ||||||| | | |||||||||||||| | | || ||| Sbjct 293068 GCGGTGGAGATTGAAAGGGAGTTTGTCTGTGACGCGCTGCCGGTCGCTTTAGTTGGGATG 293009 Query 52677 AACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC 52736 || || ||| | |||||||||||||||| |||||| | |||||||| | | Sbjct 293008 AATTGTACGTTGATGGCCCAGTACATCGAGTTTGTTGCGGATAGGCTGTTGGTTGCGTTA 292949 Query 52737 GGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTT 52796 ||| | ||| | | | ||||||||||| | ||| | ||| || ||| Sbjct 292948 GGGTACGAGAAGGTGTACGGTGTGACAAATCCGTTTGATTGGATGGAGCTCATCTC-CTT 292890 Query 52797 G-AGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 | | || ||||||||||| || |||||| | || || || ||| Sbjct 292889 GCAAGGGAAGACCAACTTCTTTGAGAAGAGGGTTGGAGAATAT 292847 >seq1118 Length=308725 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||| || || | ||| || || || ||||||||||| | Sbjct 111357 GACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCG 111416 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | |||||||| ||||| || ||||| ||||| ||| || || | | Sbjct 111417 AAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACA 111476 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| ||||||| || | ||||| ||||| || ||||| Sbjct 111477 TTG-TCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTT 111535 Query 138600 TACAAAAATCTGCATG 138615 ||||||||||||||| Sbjct 111536 CACAAAAATCTGCATG 111551 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| | ||| | | |||||||| || || || || || Sbjct 110640 CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGCA 110699 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| ||||| || || || || | | |||| | | ||| ||||| || || Sbjct 110700 AGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGG 110759 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| |||| | || | |||||| | ||| || Sbjct 110760 ATCCCTTCCTTGTCC-TGAATCTTTGACTTAACATTATCAATGGTGTCCGAACTCTCAAC 110818 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| |||||| |||||||||||||| Sbjct 110819 CTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||| ||||| || ||| || ||||| || |||||||| | | Sbjct 111813 GATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTCAAGCTGTTTACCAGCA 111872 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | || ||||| || || || || || ||||| ||| || || | | Sbjct 111873 AAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACA 111932 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| | || ||||| | || | || || ||||| |||||||| Sbjct 111933 TTGT-CAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTT 111991 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 111992 TACAAAGATCTGCAT 112006 >seq347 Length=438793 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || || || | | | ||||||||||| ||||| || || | ||| || | Sbjct 270605 CGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCG 270664 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || ||||| ||||||| |||| | | || ||||| ||||| || ||||| ||| Sbjct 270665 TCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTG 270724 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| || || | |||| || | |||||| | ||| ||||||| || | Sbjct 270725 TCCTGGATCTTGGCCTTGACATTG-TCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGAT 270783 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| ||||| || ||||||||||| ||||||||| Sbjct 270784 GGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCATG 270820 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| | ||| | | |||||||| ||||| || || || Sbjct 269909 CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGCA 269968 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| ||| ||||| || || || || | | |||| | | ||| || || | || Sbjct 269969 AGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGA 270028 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| | |||| ||||| | ||| | |||||| | ||| || Sbjct 270029 ATCCCTTCCTTGTCC-TGAATCTTTGCTTTTACATTTTCAATGGTGTCCGAACTCTCAAC 270087 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| |||||| |||||||||||||| Sbjct 270088 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 >seq181 Length=541317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||| || |||||||| || | Sbjct 240847 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCG 240788 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || || |||||||| || || || ||||| ||||| ||||||| || | Sbjct 240787 AAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTTGCCTTCACG 240728 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | || || ||||| | || | ||| || || || || ||||| Sbjct 240727 TTGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTC 240668 Query 138601 ACAAAAATCTGCATGG 138616 || || |||||||||| Sbjct 240667 ACGAAGATCTGCATGG 240652 >seq4739 Length=93234 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | || ||||| || || | |||||||||| |||||||| || || Sbjct 55237 GCCACCACGGAGGCGAAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGC 55178 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | | |||| || ||||| || |||| || | |||| || | ||| |||||||| || Sbjct 55177 AAGAATACGACCATCTTCGAGCTGCTTACTGGCAAAGATAAGCCTCTGCTGGTCCGGTGG 55118 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| ||| || | ||||| | | || || | ||| | Sbjct 55117 GATACCCTCCTTATCCTGGATCTTTGCCTTCACATTGT-CAATAGTTTCAGAACTCTCAA 55059 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | ||||||||||| || ||||| ||||| |||||||| Sbjct 55058 CATCCAAAGTGATGGTTTTACCAGTAAGGGTTTTCACAAAGATCTGCAT 55010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496161243113040