Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq347 104 2e-17 seq1118 86.0 4e-12 seq181 82.4 5e-11 >seq347 Length=438793 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| | ||| || ||||| || || || || || ||||| Sbjct 269909 CCACCACGCAGGCGAAGAACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGCA 269968 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | | || || | || || || || | ||||| | ||| || || |||| Sbjct 269969 AGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGA 270028 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| ||||||| |||| || || || | | || || Sbjct 270029 ATCCCTTCCTTGTCCTGAATCTTTGC-TTTTACATTTTCAATGGTGTCCGAACTCTCAAC 270087 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| |||||||| || |||| |||||| |||||||| |||||| Sbjct 270088 CTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACAAAAATCTGCATA 270136 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || |||||||| |||||||| || ||| | | | ||||| | ||| Sbjct 270161 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGT 270220 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 ||||| || | || | | ||| ||||| || || ||||||||||| || ||| Sbjct 270221 TTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTT 270280 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || | || || | |||| || ||||| || || || || || || Sbjct 270281 GC-CTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGT 270339 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| |||||||| Sbjct 270340 AAGGGTTTTCACAAAGATTTGCAT 270363 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 |||||| || | || || || ||||| || ||||| || || | | | ||||| Sbjct 270382 AACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCAAGGGTACGGCCATCTTC 270441 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || || | ||||| | ||| |||||| || |||||||||||||| Sbjct 270442 AAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTG 270501 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || ||||| | |||| || || || || || || || Sbjct 270502 GATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACTTCCAAAGTGATAGTCTT 270561 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 270562 GCCAGTAAGAGTCTTCACAAAGATTTGCAT 270591 >seq1118 Length=308725 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || | || || || ||||| || ||||| || ||| | | | ||||| Sbjct 111113 AACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCAAGAGTGCGGCCATCTTC 111172 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| || || | ||||| | ||| |||||| ||| |||||||||||||| Sbjct 111173 AAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGGATTCCTTCCTTGTCCTG 111232 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || ||||| | |||| || || || || || || || Sbjct 111233 GATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACCTCCAAAGTGATAGTCTT 111292 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 111293 GCCGGTAAGAGTCTTCACAAATATTTGCAT 111322 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | | || || || || || ||||| || || ||||| ||||| ||||| Sbjct 111324 CCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCA 111383 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | |||||| |||||| | |||| | |||||||| || Sbjct 111384 AGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGG 111443 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || || | || || Sbjct 111444 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACC 111503 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| || || || ||||| |||||||| ||||| Sbjct 111504 TCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 >seq181 Length=541317 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| |||| | | ||||||| | |||| Sbjct 240856 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGT 240797 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | || | || |||||||| ||| || ||||||||||| ||||| Sbjct 240796 TTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTT 240737 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || ||||| ||| || |||| ||| || || || || || Sbjct 240736 GCCTTCACGTTGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTT 240677 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 240676 AGGGTTTTCACGAAGATCTGCAT 240654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357320971355495