Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1118 129 6e-25 seq347 129 6e-25 seq596 111 1e-19 seq181 93.3 4e-14 >seq1118 Length=308725 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | ||| | ||||| || | || ||||| |||||||| || ||||| | Sbjct 111323 TCCACCCCTGAGTCGTAGGACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGC 111382 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || || ||||| |||||| |||||| | || || || ||||| Sbjct 111383 AAGAGTGCGGCCATCTTCAAGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGG 111442 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || ||||| | || | |||||| | ||||| || Sbjct 111443 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAAC 111502 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | |||||||| || || ||||| ||||||||||||||| Sbjct 111503 CTCGAGAGTTATGGTTTTGCCAGTGAGGGTTTTCACAAAAATCTGCATG 111551 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || ||||| ||||| | | || || ||| || ||||| || || Sbjct 110670 GTAGACTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCCAGCTGCTTCCCC 110729 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || ||||||| | |||||| || || || || || ||||||||| ||| | | || ||| Sbjct 110730 GCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCC-TGAATCTTTGACTT 110788 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | || | |||||||| |||||| || || | || | ||||| || |||| ||| Sbjct 110789 AACATTATCAATGGTGTCCGAACTCTCAACCTCAAGAGTGATAGTTTTTCCAGTCAAAGT 110848 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| |||||||||||||| Sbjct 110849 TTTAACAAAAATCTGCAT 110866 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || ||||| || || || || ||| ||||| ||| || Sbjct 111798 ACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTCA 111857 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| ||||| |||||| | ||||| || || || || |||||||||||| | Sbjct 111858 AGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGG 111917 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || | |||||| | || ||||| || | ||| | || || Sbjct 111918 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTTT 111977 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||||||||| |||||||| Sbjct 111978 CCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||| || | ||||| || | || ||||| || || || || || || | Sbjct 111552 CCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 111611 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || || |||||| |||||| | ||||| || || || Sbjct 111612 AGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 111671 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||| | | |||| |||||| | || || || Sbjct 111672 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAACC 111731 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || |||||||||||||| |||||||| Sbjct 111732 TCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 >seq347 Length=438793 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || |||||||| ||||| | | ||||| ||| || ||||| || || Sbjct 269939 GTAGACTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGCTTCCCT 269998 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | ||||||||| | || || || ||||||||| ||| | | ||||| Sbjct 269999 GCAAAGATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCC-TGAATCTTTGCTTT 270057 Query 127037 -AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||| | |||||||| |||||| || || | ||| | ||||| || |||| ||| Sbjct 270058 TACATTTTCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGT 270117 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| |||||||||||||| Sbjct 270118 TTTGACAAAAATCTGCAT 270135 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| | | |||| ||||| || | || ||||| ||||| || || ||||| | Sbjct 270592 TCCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGC 270651 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| || || || || || || ||| ||||||| | ||||| || ||||| Sbjct 270652 AAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGG 270711 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || ||||| | |||| |||||| | ||||| || Sbjct 270712 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAAC 270771 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| || | |||||||| || || ||||||||||| ||||||||| Sbjct 270772 CTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCATG 270820 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| || || || || || || | | ||||| ||| || Sbjct 270839 ACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCA 270898 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| ||||| |||| | | |||||||| || || || |||||||| ||| | Sbjct 270899 AGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATCCTGG 270958 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || || ||||| | || ||||| || | ||| | || ||| Sbjct 270959 ATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTTG 271018 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || |||||||||||||| |||||||| Sbjct 271019 CCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 >seq596 Length=631412 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 ||||| || | || | |||||||| ||| | ||| ||||| || || || ||||| ||| Sbjct 343404 GCTCCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 343345 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 ||| || | | || || ||||||||||| ||| |||| | || ||||| || || Sbjct 343344 GCCAAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGC 343285 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTT--GAGTTGTTCGACGGTGTCCGTACTCT 127061 || ||||| |||||||| ||| || ||||| |||| || | |||||||| || Sbjct 343284 GGGATGCCTTCCTTGTCTTGGATCTT-TGCTTTCACGTTG-TCAATGGTGTCCGAGGACT 343227 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || | ||| | ||| || || || || ||||| || || |||||||| Sbjct 343226 CCACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq181 Length=541317 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | || | ||| | || | ||| ||||| || || || ||||| ||| Sbjct 240883 GCGCCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 240824 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || || || || || |||||||||||| |||| | || || || || || Sbjct 240823 GCGAGAGTCCGGCCGTCTTCAAGTTGTTTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGT 240764 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTC 127062 || ||||| |||||||| |||||| ||| | |||| |||| ||| || | || Sbjct 240763 GGGATGCCTTCCTTGTCTTGGATTTTTGCCTTCACGTTG-TCGATGGTATCTGAGGATTC 240705 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 ||| || | ||| | ||| || || || || ||||| || || |||||||||| Sbjct 240704 GACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATGG 240652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475403875105680