Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq596 131 2e-25 seq347 100 3e-16 seq1118 93.3 4e-14 seq335 93.3 4e-14 seq1128 91.5 1e-13 >seq596 Length=631412 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| | | ||||||||| ||||| ||||| || ||||| ||||| || || ||| Sbjct 343402 TCCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 343343 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || || || || | |||||||| ||| | || | ||||||||||||||||| Sbjct 343342 CAAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGG 343283 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 |||||||| || ||||| || ||| ||| | || | || | |||||| || ||||| | Sbjct 343282 GATGCCTTCCTTGTCTTGGATCTTTGCTTTCA-CGTTGTCAATGGTGTCCGAGGACTCCA 343224 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || | ||| || || ||||| ||||| || || || ||||| Sbjct 343223 CCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq347 Length=438793 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | ||||| || || | || || || || ||||||||||| |||||||| Sbjct 270590 ATTCCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCA 270649 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||| || || ||| | ||||| | ||||||||| || Sbjct 270650 GCAAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGA 270709 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || || || |||| || | |||||| || ||| Sbjct 270710 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCA 270769 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | |||||||| || || ||||||||||| || ||||| Sbjct 270770 ACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || || ||||| || ||||||||||| | || ||| ||| Sbjct 269927 ACAAGATGCAGAGTAGACTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCC 269986 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || ||||| | ||||| | ||||| || | ||||| ||||| || || ||| Sbjct 269987 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGA 270046 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | ||| | |||||| ||| ||| || || || || | ||||| Sbjct 270047 ATCTTTGCTTTTACATTTTCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTT 270106 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||||| |||||||| ||||| Sbjct 270107 CCAGTCAAAGTTTTGACAAAAATCTGCAT 270135 >seq1118 Length=308725 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || || ||||| |||||||||||||| | || ||| ||| Sbjct 110658 ACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCC 110717 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | ||||| | |||||||| || || || ||||| || || ||| Sbjct 110718 AGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 110777 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| || | || | |||||| ||| ||| || || ||||| | ||||| Sbjct 110778 ATCTTTGACTTAACATTATCAATGGTGTCCGAACTCTCAACCTCAAGAGTGATAGTTTTT 110837 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||||| |||||||| ||||| Sbjct 110838 CCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 >seq335 Length=478728 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 45103 TTTATTTTA-TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATA 45161 ||||| || ||||||| | ||||||||||| || || || || || |||||||||||| Sbjct 394884 TTTATCATAGTTCCTCCCCTAAGCCTCAACACCAGGTGAAGTGTCGACTCCTTTTGGATA 394825 Query 45162 TTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 || || || | |||| ||| |||||||||||||| || | ||||||| ||| Sbjct 394824 TTGTAGTCAGCAAGGGTTCGGCCATCTTCCAATTGTTTTCCAGCAAAAATCAATCTCTGC 394765 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATC 45247 || || || || || |||||||| || Sbjct 394764 TGATCAGGAGGGATACCTTCTTTGTC 394739 >seq1128 Length=278557 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || ||||||||||| ||||| ||||||||| Sbjct 246588 ATGCCACCACGGAGGCGAAGAACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCG 246529 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | || ||||| ||| | || | || ||||| ||||| Sbjct 246528 GCGAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGT 246469 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || |||| || | || | ||||||| ||| Sbjct 246468 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTC 246410 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| ||||| || | || |||||||| || || || || || || ||||| ||| || Sbjct 246409 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 246351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451911064797720