Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2265 457 1e-123 seq1633 147 3e-30 seq6543 100 4e-16 seq2257 100 4e-16 seq6680 95.1 2e-14 seq1746 86.0 8e-12 >seq2265 Length=185284 Score = 457 bits (506), Expect = 1e-123 Identities = 606/838 (72%), Gaps = 11/838 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | |||| || || ||||| |||| || ||||||||| || ||||| Sbjct 95063 AGAGCGTTTCCACGGGGCAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 95004 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| | ||| | |||||| || ||||| || || ||||| ||||| ||| Sbjct 95003 TGAGTCGCCATCCAAGGACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAAAGTC 94944 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| | |||||| | || || || ||||| |||||||| || | ||| Sbjct 94943 TCAAATTCGGGATCTTTCGCTGCACGAATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 94884 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGG-----TCCAAAGACCCATAACAGGAA 6497 || || || ||||| | ||| | | |||| |||| | ||| | || || | Sbjct 94883 TTCAGAGCCAGACCGAC--TAC---TCCGAGAGCGCTCATCCATAAACCGGTTACTGGTA 94829 Query 6498 CAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAG 6557 |||| | |||||||||||||| |||||| |||||| || || || ||||| || || | Sbjct 94828 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAATCCCAAATATTTGGG 94769 Query 6558 ACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACG 6617 |||| || || ||||| |||||||| ||||| || || | |||| || || | ||| | Sbjct 94768 ACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTTAGCTTGAGTTGGGTTAAAAG 94709 Query 6618 CCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGT 6677 | | ||| ||||||| |||||||||||||| |||||||| || ||||||||||| | Sbjct 94708 CATAGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACAGTAGCACCAT 94649 Query 6678 GAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGT 6737 ||||||| || || | || | || || | ||| | || ||||| |||||||| || | Sbjct 94648 GAATAGCGCATAGAAGAGCAGCGCCCAATACACCGTCAACTCCCATTATATGAAATGGAT 94589 Query 6738 TGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACAC 6797 | | ||||| || || || || || | ||||| | ||| || ||||| ||||| |||| Sbjct 94588 TCAATGTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACAC 94529 Query 6798 CAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACA 6857 |||| |||||||||||||||| ||||| || || ||||| || || || ||||| | Sbjct 94528 CAAAACTAGGCGCAAAGAACCAACCAGACTGACCCAGTGGATAAATCAGGAATACAGAAA 94469 Query 6858 CAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGAC 6917 |||| || ||||| ||| |||| || | ||||||||| || || ||||| || | | Sbjct 94468 CAAAAACTGCAATTGGAACAGAGAATGTGATTGCATTATAAGGTCGAAT-TGAACAAATC 94410 Query 6918 GTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCA 6977 | || | ||||| || || |||||||||||||| || | || | ||||| || || | Sbjct 94409 GAGCAAGTTCAAATTGACGTAGCATGAAACCTATTAGTCCGAAAGTGCCGTGTAGAGCAA 94350 Query 6978 CAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGAC 7037 |||||| ||| || || || | ||| ||| || |||||||| || ||||| |||| Sbjct 94349 CAAAAGTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGAC 94290 Query 7038 CCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 ||||||| | | | |||||| | | | | || |||||| || || || || || Sbjct 94289 CCCATAGTAACAACAAAGAATGTGCTAAACTATTAGTAGGAGTAGAAACTGCGGCGGT 94232 >seq1633 Length=412253 Score = 147 bits (162), Expect = 3e-30 Identities = 279/403 (69%), Gaps = 7/403 (2%) Strand=Plus/Plus Query 8121 GAGCAGAGTATGCTACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACT 8180 |||| || ||||| ||| ||||| || |||||||| | |||| || ||||||||||| Sbjct 238148 GAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT 238207 Query 8181 CACGACCCATGTATGCATAGATA--CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGG 8238 ||| |||||||| || || || || | | || || | | || || | | |||| Sbjct 238208 TACGGCCCATGTA-ACA-AGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGG 238265 Query 8239 ACCACCGTTGTAGAGCCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAG 8298 || || ||||| | ||| ||| ||| || || ||||| || | || || ||| | | Sbjct 238266 ACTGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAA 238325 Query 8299 ACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAG 8358 ||| ||||| ||||| ||||| || |||||||| || || |||| ||||| | || Sbjct 238326 ACCTATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAG 238385 Query 8359 CGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGC 8418 || | | || |||||||| || |||||||| || | | ||||| ||| | || | | Sbjct 238386 AGACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAAC 238445 Query 8419 GACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAAC 8477 || || || ||| | || |||| | | ||||| ||||||| ||||| ||||| Sbjct 238446 GATAATAAATACAGA-AGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCATT 238504 Query 8478 CGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAA 8520 ||| || ||| | || | ||| ||||| ||||| ||||| Sbjct 238505 CGATGTAAAGATGGTTTTCAGTGCTGGTTATACAGTT-CAGAA 238546 >seq6543 Length=70685 Score = 100 bits (110), Expect = 4e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 ||| ||||||||| | || |||| | | | || ||||||||| || || || ||||| Sbjct 60362 TCAATAAAGTTCACCTTCCTTGTGAGTGTGAATCACACAATCTGAAGTTGGGTATGAAAC 60303 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||| ||||| ||| |||| | | || || | |||||||||||| || ||| || Sbjct 60302 ACAAGTCAGCAGGTAACCCTCTTTCATTTGATTATCATCAAGGAAGGAACCATCAGACTG 60243 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 || || ||||| || | | || || ||||| | || || || ||||||||||| || Sbjct 60242 GTCCACTGTACCTGATACCATCTTACCGGCACAGGTGGAGCAAGCCCCAGCTCGGCAAGA 60183 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 ||| || || || || || | ||||| ||||| | ||||| Sbjct 60182 ATAGGGCAGCTCGATTCCAGCATTCTCAGCTGCATCTAAGATGTA 60138 >seq2257 Length=219887 Score = 100 bits (110), Expect = 4e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 ||| ||||||||| | || |||| | | | || ||||||||| || || || ||||| Sbjct 145703 TCAATAAAGTTCACCTTCCTTGTGAGTGTGAATCACACAATCTGAAGTTGGGTATGAAAC 145762 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||| ||||| ||| |||| | | || || | |||||||||||| || ||| || Sbjct 145763 ACAAGTCAGCAGGTAACCCTCTTTCATTTGATTATCATCAAGGAAGGAACCATCAGACTG 145822 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 || || ||||| || | | || || ||||| | || || || ||||||||||| || Sbjct 145823 GTCCACTGTACCTGATACCATCTTACCGGCACAGGTGGAGCAAGCCCCAGCTCGGCAAGA 145882 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 ||| || || || || || | ||||| ||||| | ||||| Sbjct 145883 ATAGGGCAGCTCGATTCCAGCATTCTCAGCTGCATCTAAGATGTA 145927 >seq6680 Length=52110 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 6497 ACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGA 6556 ||||| | |||||||||| ||| |||| | ||||| ||| | |||||||| || Sbjct 10757 ACAAATAACATAAAGAAACGTAACCAATGAATATTGAAGAAATAAACCCCAAAGATTTGC 10816 Query 6557 GACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAAC 6616 | ||| || | ||||| |||||||| ||||| || || || |||| || || | ||| Sbjct 10817 GGCCAAAAGTGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAA 10876 Query 6617 GCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTC 6663 || ||| ||||||| |||||||||||||| ||| || |||| Sbjct 10877 GCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAATAATCTC 10923 >seq1746 Length=218889 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 10201 CATCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAA 10260 ||||||||||||||| | || |||| | | | || ||||||||| || || || ||| Sbjct 200704 CATCAGTAAAGTTCACCTTCCTTGTGAGTGTGAATCACACAATCTGAAGTTGGGTATGAA 200763 Query 10261 ACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTT 10320 | || ||||| ||| | || | | || || | ||||||||||| || ||| Sbjct 200764 ATGCAAGTCAGCAGGTACCCCTCCTTCATTTGATTGTCATCAAGGAAGGAACCATCAGAC 200823 Query 10321 TGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCAC 10380 || || || | ||| || | | |||| ||||| | || || || || |||| ||| Sbjct 200824 TGGTCCACTGAACCTGATACCATCATGCCGGCACAGGTAGAGCATGCCCCGGCTCTGCAT 200883 Query 10381 GAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 || ||| || || || ||||| | ||||| ||||| || ||||| Sbjct 200884 GAATAGGGCAGCTCGATTCCTGCATTCTCAGCTGCATCTAGGATGTA 200930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621997987636080