Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq339 96.9 4e-15 seq306 89.7 6e-13 >seq339 Length=880584 Score = 96.9 bits (106), Expect = 4e-15 Identities = 168/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||| |||||||| || | | || || |||||| || ||| Sbjct 293136 GCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCT 293195 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||||||||||||||||| ||| || || | || || || |||||||||||| Sbjct 293196 GGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATC 293255 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGG-AGCGGGACTTTGTATCAAA 127698 || ||||| || || || || | | | |||||| |||| ||| || | || Sbjct 293256 CCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGTTGAT---- 293311 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 |||||| || ||||| | ||||| | | | || || || |||| ||| || | || Sbjct 293312 CCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGAA 293371 Query 127759 GAG 127761 ||| Sbjct 293372 GAG 293374 >seq306 Length=475288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 190/281 (68%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGG- 12850 || |||||||| || ||||| | |||||||| || || || | ||||||||| | Sbjct 94761 AATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCCT 94702 Query 12851 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 | || | || || | | ||| | || ||||| |||||||| || || || || || || Sbjct 94701 CCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGCA 94643 Query 12911 CGG-----TTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 12965 || | ||||| ||| ||||| | ||| | ||||||| || || || Sbjct 94642 AGGAGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTCGATGCCCCTACC 94588 Query 12966 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCA 13025 |||||||||| ||||||||| | | |||| ||| || || || || || ||| Sbjct 94587 CCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGAGAAAAACGGCACCCCGGCTTCT 94528 Query 13026 CCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || || | || || || || ||||||||||| || ||||| Sbjct 94527 CCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGG 94487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613382144226120