Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq339 140 5e-28 >seq339 Length=880584 Score = 140 bits (154), Expect = 5e-28 Identities = 536/835 (64%), Gaps = 15/835 (2%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || ||||||||||| || | || ||| || ||||| | | || || | Sbjct 292861 TCTTCTCAAAGAAGTTGGTCTTCCCTTGCAAGGAGATGAGCTCCATCCAATCAAACGGAT 292920 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | |||| || |||| | || | || ||| || ||| || || ||||| | Sbjct 292921 TTGTCACACCGTACACCTTCTCGTACCCTAACGCAACCAACAGCCTATCCGCAACAAACT 292980 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 ||||||| |||| | ||| || ||||| | | || || ||||| || Sbjct 292981 CGATGTACTGGGCCATCAACGTACAATTCATCCCAACTAAAGCGACCGGCAGCGCGTCAC 293040 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | | ||||||| | |||||||| ||||| || |||| || | || || || | | Sbjct 293041 AGACAAACTCCCTTTCAATCTCCACCGCCTCCTTCACTATACCCCTCACGCGCTCCTCGC 293100 Query 159888 CCGGCTTGC-CCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | |||||| || || | || | ||||||||||| |||||||||| || Sbjct 293101 TCAGCTTGCTCCTCAACAGAGAGTATATA----AGGCACGCAAAATCGCAGTGCAAACCT 293156 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 ||||| || || | ||||||||||| | | |||| || ||||||| || ||| || Sbjct 293157 TCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCTGGCATGAGACCCCGCTTCTTC 293216 Query 160007 AGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 |||||||| |||| ||| |||| ||| || |||||||| |||||| ||||| || Sbjct 293217 AGCCAAAATATGG-AGCAGAAGCTCCCGGAGAAGAAGATCCCTTCCACGCAAGCAAAGGC 293275 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 |||| |||||| | | ||| | || | | | ||||| | ||||||| || || Sbjct 293276 GACGATCCTCTCGGCGA---AGGTCTCGGAGCTGTTGATCCACTTGATGGCCCAATCCGC 293332 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||| | || | |||||||| ||||| ||||| || | | || || ||| Sbjct 293333 CTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTGGAAGAGGCGGTGCTTGACCTCTGA 293392 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 |||||||| || | | ||| |||||| || | ||| | || ||||| || Sbjct 293393 GTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACATCTCGGAGTGGATGTTCTCGATTGC 293452 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTG 160305 ||||| ||| |||||| ||||| ||| | ||| |||| | Sbjct 293453 GATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGATCTCGGTCATGAAACGGCC 293512 Query 160306 ACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGAT 160365 | || || | || | ||||||| ||| || ||||| || | | ||||||||| Sbjct 293513 GGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGAGAGAT 293572 Query 160366 GAAATGTCTCTCGTC-TTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAAT 160424 ||| || ||||||| ||| || | ||||||||| ||| |||| | || Sbjct 293573 GAAGTGGGTCTCGTCGGGGGTTAAGGC----TTCCCAGTGGCGGGTGTCCTGGGAGAGAT 293628 Query 160425 CAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 | ||||| || ||| |||| || |||| || | |||||||| ||||||| Sbjct 293629 CGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGAT 293683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794993117551920