Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq596 136 4e-27 seq1128 120 3e-22 seq347 114 1e-20 seq1118 109 6e-19 >seq596 Length=631412 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| || | |||||||||||| | || |||||| ||||| |||||||||| Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| |||||||| || |||||||| || | ||| |||||||| | ||| Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || |||||||| |||||| | ||| ||| | | | ||||| || ||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTT-TGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCAC 343223 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| ||||| || || ||||| || ||||| || ||||| |||||| || Sbjct 343222 CTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTGTG 343171 >seq1128 Length=278557 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 246322 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 246263 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 246262 GATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTT-AACGT 246204 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||||| ||||| || | |||||||| ||||| |||| || || | Sbjct 246203 TGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAAAGTCTTCA 246144 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 246143 CGAAGATCTGCAT 246131 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| || || |||| ||||| || |||| ||||||||||| |||||||| Sbjct 246549 TCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTCCTCGAGCTGCTTTCCGGCGAAG 246490 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | || ||||||||| |||||| ||||| ||| Sbjct 246489 ATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 246431 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||||| || || || | |||||||| ||||| || || || || || Sbjct 246430 GTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 246371 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 246370 GAAGATCTGCAT 246359 >seq347 Length=438793 Score = 114 bits (126), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| || || || | |||||||| |||| || || ||||| |||||||| Sbjct 270628 CTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAA 270687 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | || ||||||||| |||||| ||||| | Sbjct 270688 GATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 270747 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| || || || | |||||||||||||| || || ||||| Sbjct 270748 GTCGATGGTGTCAGAGCTC---TCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTT 270804 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 270805 TACAAAGATCTGCAT 270819 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | || | ||||| || |||||||||||||||||||| | Sbjct 270363 TGCCCCCCCTCAGACGAAGAACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCG 270422 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || ||||| || || || || ||||| | ||||||||||| | Sbjct 270423 CAAGGGTACGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAG 270482 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| ||||| | | | || || ||| | Sbjct 270483 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAA 270542 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| ||||| || ||||| || || || || ||||||||||||||| Sbjct 270543 CTTCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATTTGCATT 270592 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||| |||||||| | |||||||| | || || ||||| ||||| || || Sbjct 270173 TCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAG 270232 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||||||| | || | | |||||||| |||||| ||| | | Sbjct 270233 ATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTTGCCTTAACATTA 270292 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | |||||||| ||| || || | ||||| || ||||| || || ||||| ||| Sbjct 270293 TCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGTAAGGGTTTTCACA 270352 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 270353 AAGATTTGCAT 270363 >seq1118 Length=308725 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||| | |||| ||||| || |||||||||||||||||||| | Sbjct 111094 TGCCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTG 111153 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||||||| | || || ||||| || || || || ||||| | ||||||||||| | Sbjct 111154 CAAGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTG 111213 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| |||||| ||||| | | | || || ||| | Sbjct 111214 GGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAA 111273 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| ||||| || ||||| || || || || ||||| ||||||||| Sbjct 111274 CCTCCAAAGTGATAGTCTTGCCGGTAAGAGTCTTCACAAATATTTGCATT 111323 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| ||| |||||| |||||||| || || | ||||| ||| | || || Sbjct 110658 ACAAGATGCAGAGTAGACTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCC 110717 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || ||||| | ||||||||| | || | | ||||||||| Sbjct 110718 AGCTGCTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 110777 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | | | | ||||| ||| || || || | ||||| ||| Sbjct 110778 ATCTTTGACTTAACATTATCAATGGTGTCCGAACTC---TCAACCTCAAGAGTGATAGTT 110834 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| ||||||||||| || ||||| Sbjct 110835 TTTCCAGTCAAAGTTTTAACAAAAATCTGCAT 110866 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| || ||||| | |||||||| | || || ||||| || || || || Sbjct 111816 TCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAG 111875 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||||| | || | | |||||||||| |||||| ||||| | Sbjct 111876 ATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG 111935 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| ||| || || | |||||||| || || || || ||||| Sbjct 111936 TCAATGGTGTCAGAGCT---TTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTT 111992 Query 46580 ACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 111993 ACAAAGATCTGCAT 112006 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||||| |||||||| | || || ||||| ||||| || || Sbjct 110904 TCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAA 110963 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||| ||||| | || | | ||||||||| ||||| ||| | | Sbjct 110964 ATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTTTGCCTTCACATTA 111023 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || ||| || || | ||||| |||||||| || || ||||| ||| Sbjct 111024 TCAATCGTATCAGAACTTTCAACCTCTAAAGTGATTGTTTTGCCAGTGAGGGTTTTCACA 111083 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 111084 AAGATTTGCAT 111094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565123183217640