Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq339 304 1e-77 seq596 140 3e-28 seq1128 127 2e-24 seq181 122 9e-23 seq1118 109 5e-19 seq347 102 8e-17 >seq339 Length=880584 Score = 304 bits (336), Expect = 1e-77 Identities = 628/917 (68%), Gaps = 27/917 (3%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||||||||| || ||| | |||||||| || || || || || | |||||| |||||| Sbjct 292842 TTTTGATATTCTCCAACCCTCTTCTCAAAGAAGTTGGTCTTCCCTTGCAAGGAGATGAGC 292901 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCGATCAGGTCGACGA 132721 ||| |||| || || || | ||| ||| || || | | | | || | Sbjct 292902 TCCATCCAATCAAACGGATTTGTCACACCGTACACCTTCTCGTACCC-TAACG-CAACCA 292959 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA 132781 |||||| || || || ||||||||||| || | ||| ||||| | ||||| | Sbjct 292960 ACAGCCTATCCGCAACAAACTCGATGTACTGGGCCATCAACGTACAATTCA-TCCCAACT 293018 Query 132782 GACGC-ACCGGCAGCGCTTCGGTGAGAAAG--CGTTGCTCGATGGCGACCGCGTCGGTGA 132838 | || ||||||||||| || || ||| | || || || | ||||| || | | Sbjct 293019 AAAGCGACCGGCAGCGCGTCACAGACAAACTCCCTT--TCAATCTCCACCGCCTCCTTCA 293076 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACC--AAATGCTTGAACATCAAGCA 132896 | || |||| |||||| || ||||| || |||| || || | | | || | ||| Sbjct 293077 CTATACCCCTCACGCGCTCCTCGCTCAGC--TTGCTCCTCAACAGAGAGTATATAAGGCA 293134 Query 132897 AGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCC 132956 ||||| ||||| ||||| || ||||| | || | | |||||| ||| || | || Sbjct 293135 CGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCC 293194 Query 132957 GGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGAC 133016 |||||||| || || || || ||||||||||||| | ||| || || || ||||||| Sbjct 293195 TGGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGAT 293254 Query 133017 GCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGAT 133076 || || ||| || || || || | | |||| |||| || || |||| ||| Sbjct 293255 CCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTC---TCGGAGCTGTTGAT 293311 Query 133077 CCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTCGATGGCGTTC 133134 ||| | ||||| || ||||| | | | |||||||||| ||| |||||||||| Sbjct 293312 CCACTTGATGGCCCAATCCGCCTT--CCTGGCCACGCACGGCACCGTCTCGATGGCGTGG 293369 Query 133135 AACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATT 133194 || | ||| | || | || ||| | |||||| |||| ||| ||||| Sbjct 293370 AAGAGGCGGTGCTTGACCTCTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTACATC 293429 Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | |||||| || ||||| || |||||||| ||| || |||||| | ||| Sbjct 293430 TCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACC 293489 Query 133255 TGCACTTCTTGAGC--GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGG 133312 || | ||| | | |||||| || | || || ||| ||||||||||||| ||||| Sbjct 293490 TGGA--TCTCGGTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGG 293547 Query 133313 CGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGT 133372 |||| ||||| || | ||| |||||| ||| ||||| | | | ||| ||||||| Sbjct 293548 CGAAGAAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAAGGCTTCCCAGT 293607 Query 133373 CGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTT 133432 ||| ||||||| ||| || || ||||||||| ||||||| || || |||||||| || | Sbjct 293608 GGCGGGTGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCT 293667 Query 133433 TGTACATACTCCACATGTCCGAATATTGTATGGGAAAAAT-CACAAACCGGCGGGGGTTT 133491 ||||||| ||| || |||| || || ||||| || || || |||| | | ||| || Sbjct 293668 TGTACATCTCCCAGATTTCCGGGTACTGGATGGGGAACATGCAGAAACGGTCCGGGTTTG 293727 Query 133492 TCGCGCAACAGCGGCTC 133508 ||| | |||||||| Sbjct 293728 GGGCG-AGAAGCGGCTC 293743 >seq596 Length=631412 Score = 140 bits (154), Expect = 3e-28 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| || ||||| || || |||||| | || || ||| || | Sbjct 343174 AATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTCCTC 343233 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-AC 38360 |||| | | | |||| | |||| ||| |||| ||||| || || || ||||||| || Sbjct 343234 GGACACCATTGACAACG-TGAAAGCAAAGATCCAAGACAAGGAAGGCAT-CCCGCCGGAC 343291 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||| | ||| || |||||||| || |||| | || | ||||||| Sbjct 343292 CAGCAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGACGGTAGGACTTTGGCCGACTAC 343351 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| ||||||| ||| ||||| || | |||||||| || Sbjct 343352 AACATCCAGAAGGAGTCGACGCTCCATCTGGTGTTGAGGTTGAGAGGAGG 343401 >seq1128 Length=278557 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| |||| || ||| || | Sbjct 246131 ATGCAGATCTTCGTGAAGACTTTGACCGGCAAGACCATCACCCTCGAGGTGGAGAGCAGC 246190 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || |||| ||||| || || || || | ||||| Sbjct 246191 GACACCATCGACAACG-TTAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCGGACCA 246249 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | ||| || || ||||| || |||| ||||||||| ||||||||| Sbjct 246250 GCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAA 246309 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || | || || ||| | | |||||| Sbjct 246310 CATCCAGAAGGAGTCCACACTCCACCTCGTCCTCCGTCTCCGTGGCGGC 246358 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| || || ||| | || || ||| || | Sbjct 246587 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACGATTACCCTGGAGGTTGAGAGCAGC 246646 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | |||||||| ||||| || || || || | ||||| Sbjct 246647 GACACCATCGACAACG-TCAAGGCAAAAATCCAGGACAAGGAAGGGATCCCACCGGACCA 246705 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || || || ||||| || |||| ||||||||| |||||||| Sbjct 246706 GCAGAGGCTCATCTTTGCAGGGAAGCAGCTAGAGGACGGGCGCACCCTTGCAGACTACAA 246765 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || ||||||||||| || | || || Sbjct 246766 CATCCAGAAGGAGTCTACACTCCACCTGGTGCTGCGTCTGCGTGGTGG 246813 >seq181 Length=541317 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || ||||| || || || ||| | || ||||| || | Sbjct 240654 ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATAACCCTAGAGGTCGAATCCTCA 240713 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | |||||||| ||||| || || || || | ||||| Sbjct 240714 GATACCATCGACAACG-TGAAGGCAAAAATCCAAGACAAGGAAGGCATCCCACCAGACCA 240772 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||| || ||||| || || |||| || || ||| ||||||||| Sbjct 240773 ACAACGCCTCATCTTCGCTGGAAAACAACTTGAAGACGGCCGGACTCTCGCCGACTACAA 240832 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| ||||||| || | ||||| || | | |||||| Sbjct 240833 CATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTCCGCGGCGGC 240881 >seq1118 Length=308725 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| |||||||| ||||| | || || || | Sbjct 111094 ATGCAAATCTTTGTGAAAACCCTCACTGGCAAAACAATCACTTTAGAGGTTGAAAGTTCT 111035 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || || | | || | ||| || | ||||| ||||| || ||| | ||||| Sbjct 111034 GATACGATTGATAATG-TGAAGGCAAAGATTCAAGACAAGGAGGGTATCCCCCCAGACCA 110976 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| |||| |||| || ||||||||||| || || | ||||| || ||||||||| Sbjct 110975 ACAGAGGCTTATTTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCCGACTACAA 110916 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || | ||||| ||| Sbjct 110915 CATCCAGAAAGAATCCACCCTTCACCTCGTGCTCCGT 110879 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| ||||| || || ||||||||| | || ||||| | | Sbjct 112006 ATGCAGATCTTTGTAAAAACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAAAGCTCT 111947 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || || | ||||| Sbjct 111946 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 111887 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || |||| || | || || |||||||| || || | ||||| || ||||| ||| Sbjct 111886 CAAAGGCTGATCTTTGCTGGTAAACAGCTTGAGGATGGACGCACTCTGGCTGACTATAAC 111827 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || ||||| || ||| | || || || Sbjct 111826 ATCCAAAAGGAATCCACACTTCACTTGGTTCTCCGTCTCAGGGGTGG 111780 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || || || || || ||||| || ||||| | || || || | Sbjct 111323 AATGCAAATATTTGTGAAGACTCTTACCGGCAAGACTATCACTTTGGAGGTTGAAAGTTC 111264 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | || | || |||| ||||| || ||||| || ||||||| Sbjct 111263 TGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCCGACCA 111204 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || |||||||| || || | ||||| || |||||||| Sbjct 111203 GCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGCACTCTTGCAGACTACAA 111144 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || |||| ||||| || ||| | || || ||| Sbjct 111143 TATCCAAAAGGAATCCACTTTGCACTTGGTTCTTCGTCTTAGGGGTGGC 111095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| ||||||||||| || |||| || ||| | | Sbjct 111550 ATGCAGATTTTTGTGAAAACCCTCACTGGCAAAACCATAACTCTCGAGGTTGAGAGCTCT 111491 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | |||||| Sbjct 111490 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 111431 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || |||| || | ||| || ||||| || || || | ||||| || || || ||| Sbjct 111430 CAAAGGCTGATCTTCGCTGGTAAACAACTTGAAGATGGCCGCACTCTTGCTGATTATAAC 111371 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||| | || || || ||||| || || Sbjct 111370 ATTCAAAAGGAGTCCACCCTCCACTTGGTCCTACG 111336 >seq347 Length=438793 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||| || ||||| | || || || | Sbjct 270363 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACTTTAGAGGTTGAAAGTTCT 270304 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| || | | |||| | ||| |||| ||||| || || || || | ||||| Sbjct 270303 GACACGGTTGATAATGTTAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAG 270244 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||||||||| || || | ||||| || ||||||||| Sbjct 270243 CAGAGGCTTATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTGCTGACTACAAC 270184 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||| | || || || ||||||| ||| Sbjct 270183 ATCCAAAAAGAATCCACCCTTCACCTGGTGCTCCGT 270148 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| ||||| |||||||||||||| |||| || ||| | | Sbjct 270819 ATGCAGATCTTTGTAAAAACCCTCACTGGCAAAACCATCACTCTCGAGGTTGAGAGCTCT 270760 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || || || | ||||| Sbjct 270759 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAG 270700 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | ||| || || || || || |||| ||||| || || || ||| Sbjct 270699 CAAAGGTTGATCTTCGCCGGTAAGCAACTTGAAGACGGCCGCACTCTTGCTGATTATAAC 270640 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| | || || || ||||| ||||| Sbjct 270639 ATCCAAAAGGAGTCCACCCTCCACTTGGTCCTGCG 270605 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || || || ||||| || ||||| | || || || | Sbjct 270592 AATGCAAATCTTTGTGAAGACTCTTACTGGCAAGACTATCACTTTGGAAGTTGAAAGTTC 270533 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | | | || | || |||| ||||| || ||||| || ||||||| Sbjct 270532 TGATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCA 270473 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || |||||||| || || | || ||||| |||||||| Sbjct 270472 GCAGAGGTTGATTTTTGCAGGTAAACAGCTTGAAGATGGCCGTACCCTTGCGGACTACAA 270413 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| | || |||| || || || ||| |||| || ||| Sbjct 270412 TATCCAAAAGGAATCCACTTTGCACTTAGTTCTTCGTCTGAGGGGGGGC 270364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500070846026880