Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq182 136 5e-27 seq339 125 9e-24 seq306 104 3e-17 >seq182 Length=789423 Score = 136 bits (150), Expect = 5e-27 Identities = 311/465 (67%), Gaps = 20/465 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || ||| | | || ||||| || || |||| |||||| || | |||||| Sbjct 233571 TCAAGAATGTCAGCCCTGTTAGTTGCTGCAATAACAATAATACCAGTATTACCCTCAAAA 233630 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||| ||||||||||| || ||||| | ||||||||| || | Sbjct 233631 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CCA 233687 Query 16038 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 ||| |||| | | ||| ||| || |||||||| ||||| | || || || || Sbjct 233688 CCAATTCCAGTTCCTCTTTGTCGTCCGACAGCATCAATTTCATCCACAAATACAATACAA 233747 Query 16095 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | ||| ||| ||||| || || | ||| || ||||| || Sbjct 233748 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCACGGACTCTAGAGGCACCAACACCCAC 233806 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTGGATG------AAGGGGACATTAGATTC 16207 |||||| || ||||| | |||||| | |||| || || ||| || ||| Sbjct 233807 AAACATTTCAACAAACT------CGGAACCTGAGATGGAGAAAAATGGAACACCAGCTTC 233860 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||| ||| ||| ||||||||||| || || || || || | || || | Sbjct 233861 ACCAGCAATTGCTTTGGCTAGAAGAGTCTTCCCAGTTCCCGGAGGGCCAACAAGAAGAAC 233920 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| |||||| ||| ||| | || | | | |||||| | ||| | ||| ||||| Sbjct 233921 ACCTTTTGGAATGCGGGCTCCAATAGCAGTGAACCGCTCAGGCTTCTTCAAAAACTCCAC 233980 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||| || || | || || |||||| || ||||||| Sbjct 233981 CACCTCCATGAAATCTTGCTTTGCCTCGTCAACTCCAGCAACATC 234025 >seq339 Length=880584 Score = 125 bits (138), Expect = 9e-24 Identities = 175/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | |||||| | || || || || | | ||| ||||||||||| || ||| Sbjct 293374 CTCTTCCACGCCATCGAGACGGTGCCGTGCGTGGCCAGGAAGGCGGATTGGGCCATCAAG 293315 Query 102150 TGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAG 102209 ||| | | || || | |||| || ||| | || |||| ||||| || || || Sbjct 293314 TGGATCAA--CAGCTCCGAGA-CCTTCGCCGAGAGGATCGTCGCCTTTGCTTGCGTGGAA 293258 Query 102210 GGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATG 102269 || ||||||||||| || ||||||| | || | |||||| |||||||| ||||||||| Sbjct 293257 GGGATCTTCTTCTCCGGGAGCTTCTGCTCCATATTTTGGCTGAAGAAGCGGGGTCTCATG 293198 Query 102270 CCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTT 102329 ||||| ||| ||||||||||||| | | || |||||||| || | ||| || ||| Sbjct 293197 CCAGGACTCACCTTCTCCAACGAGTTGGTGTCACGTGACGAAGGTTTGCACTGCGATTTT 293138 Query 102330 GCG 102332 ||| Sbjct 293137 GCG 293135 >seq306 Length=475288 Score = 104 bits (114), Expect = 3e-17 Identities = 255/382 (67%), Gaps = 11/382 (3%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| | ||| || ||||| || || | ||||||||| || Sbjct 94762 AAATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCC 94703 Query 16034 -CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | || | ||||| | | ||| | |||||||||||||| ||||| || || || |||| Sbjct 94702 TCCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGC 94644 Query 16093 ATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 | || || ||| || | ||||| | ||||| || | | || || || Sbjct 94643 AAGGAGCCTTCGATTTGGCCTTC----TCAAACAAATCCCTCACTCTCGATGCCCCTACC 94588 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || ||||||| ||||||||| | | |||| ||| || || || || | ||| Sbjct 94587 CCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGAGAAAAACGGCACCCCGGCTTCT 94528 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || |||| || || || ||||| ||||| || |||||||| |||| | | || Sbjct 94527 CCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGGGGGACCCACTAACAGACAC 94468 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||| ||| ||||| || || | | ||| | ||||| | || | |||||| ||| Sbjct 94467 CCTTTTGGGATCTTAGCTCCTAATGCGGTGTACTTATCAGGGTTTTTCAAAAAATCAACA 94408 Query 16329 ATCTCTTCCAATT-CATCTTTG 16349 | || | ||||| || ||||| Sbjct 94407 ACTTCCTGCAATTCCAGCTTTG 94386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620615869421040