Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq182 145 9e-30 seq3231 120 4e-22 seq339 109 6e-19 seq306 102 1e-16 >seq182 Length=789423 Score = 145 bits (160), Expect = 9e-30 Identities = 311/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || ||| | | || || || || || |||| |||||| || | | |||||| Sbjct 233571 TCAAGAATGTCAGCCCTGTTAGTTGCTGCAATAACAATAATACCAGTATTACCCTCAAAA 233630 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||| ||| ||||||| || ||||| | ||||||||| || | Sbjct 233631 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CCA 233687 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| |||| | | ||| ||| || |||||||| ||||| | || |||||||| Sbjct 233688 CCAATTCCAGTTCCTCTTTGTCGTCCGACAGCATCAATTTCATCCACAAATACAATACAA 233747 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || ||||| || || || ||| || ||||| ||| Sbjct 233748 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCACGGACTCTAGAGGCACCAACACCCACA 233807 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTGGATG------AAGGGGACATTAGATTCA 9515 ||||| || ||||| | |||||| | |||| || || ||| || |||| Sbjct 233808 AACATTTCAACAAACT------CGGAACCTGAGATGGAGAAAAATGGAACACCAGCTTCA 233861 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || ||||| ||| ||| ||||||||||| || || || || || | || || || Sbjct 233862 CCAGCAATTGCTTTGGCTAGAAGAGTCTTCCCAGTTCCCGGAGGGCCAACAAGAAGAACA 233921 Query 9576 CCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || |||||| ||| ||| | || | | | |||||| | ||| | ||| ||||| Sbjct 233922 CCTTTTGGAATGCGGGCTCCAATAGCAGTGAACCGCTCAGGCTTCTTCAAAAACTCCACC 233981 Query 9636 ATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 | ||| || || | || || |||||| || ||||||| Sbjct 233982 ACCTCCATGAAATCTTGCTTTGCCTCGTCAACTCCAGCAACATC 234025 >seq3231 Length=135437 Score = 120 bits (132), Expect = 4e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || ||||||||||| ||||||||||| ||||| |||| || ||| ||||| | ||| Sbjct 18308 TGAGGTCTTGGTGTTCCAGCATTGAAAAGGGTAGGTGAAGCATGAGTGAACCACCGTTGA 18367 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | | |||||| | | ||||| ||||| || ||| |||||| || | | Sbjct 18368 GACATCATATGGTATGTTTTGATAACAGAGTCAATATCATCCTTGTGGATTCCAACAGAA 18427 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||| | ||| ||| | || | | | || | || | || |||| | Sbjct 18428 ACCCTCATTAACATATGTTGAGGTCTCTCTACAACCTTCCCTTGGA--CCTTCAAGAGGT 18485 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 || | ||||||||||||||| ||||||||| || | ||| ||||||| Sbjct 18486 AGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 18534 >seq339 Length=880584 Score = 109 bits (120), Expect = 6e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || || || || | | || || |||||| || ||| Sbjct 293136 GCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAGTCCT 293195 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 |||||||||||||||||||||| |||| | || | |||||| ||||||||||||||| Sbjct 293196 GGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAAGATC 293255 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 || ||||| || ||||| || | | | ||||||||||| Sbjct 293256 CCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGG 293295 >seq306 Length=475288 Score = 102 bits (112), Expect = 1e-16 Identities = 257/384 (67%), Gaps = 15/384 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || ||||| | || || ||||| || || | ||||||||| || Sbjct 94762 AAATCCATCCATTTCCGTCAACAACTGATTGATAGTCTGCTCTCTCTCATCATTCCCTCC 94703 Query 9341 -CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | || | ||||| | | ||| | |||||||||||||| ||||| || || ||||| | Sbjct 94702 TCCTAGC-CCAGCCCCTCTCTGCCTCCCCACGGCATCAATTTCATCGATAAACACAATGC 94644 Query 9400 ATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 | || | ||||| ||| | ||||| | ||| | || || || || || Sbjct 94643 AAGGAGCCTTCGATTT-----GGCCTTCTCAAACAAATCCCTCACTCTCGATGCCCCTAC 94589 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 || ||||||| ||||||||| | | |||| ||| || || || || | ||| Sbjct 94588 CCCCACAAACAGCTCCACAAACTCCGACGCGGCACAGGAGAAAAACGGCACCCCGGCTTC 94529 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 || |||| || || || ||||| ||||| || |||||||| |||| | | | | | Sbjct 94528 TCCGGCAACCGCACGTGCTAGAAGGGTCTTCCCGGTACCTGGGGGACCCACTAACA-GAC 94470 Query 9575 ACCC-CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633 |||| ||| ||||| || || | | ||| | ||||| | || | |||||| | Sbjct 94469 ACCCTTTTGGGATCTTAGCTCCTAATGCGGTGTACTTATCAGGGTTTTTCAAAAAATCAA 94410 Query 9634 CAATCTCTTCCAATT-CATCTTTG 9656 ||| || | ||||| || ||||| Sbjct 94409 CAACTTCCTGCAATTCCAGCTTTG 94386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589860539788680