Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2265 464 8e-126 seq1633 138 1e-27 seq1443 82.4 9e-11 >seq2265 Length=185284 Score = 464 bits (514), Expect = 8e-126 Identities = 583/798 (73%), Gaps = 3/798 (0%) Strand=Plus/Plus Query 181640 CATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAA 181699 |||||| | | |||| |||||||||||||| || || ||||| || ||| ||| Sbjct 94268 CATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAA 94327 Query 181700 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATG 181759 | || || || ||| ||||||| || || ||||| | |||| || || ||||| ||| Sbjct 94328 TTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATG 94387 Query 181760 CTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTT 181818 || | ||||||||||||||||| | | || ||| ||||| || ||||| || | || Sbjct 94388 CTACGTCAATTTGAACTTGCTCGATTTGTTC--AATTCGACCTTATAATGCAATCACATT 94445 Query 181819 TTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAG 181878 || | ||| ||||| || || || |||||||| || || ||||| ||||| || || | Sbjct 94446 CTCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGG 94505 Query 181879 TTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCA 181938 ||||||||||||||| ||||| ||||| || || || || || ||| | ||||| |||| Sbjct 94506 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCA 94565 Query 181939 GGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGG 181998 || |||||||||||||| | ||||| || ||||| ||||| |||| ||| | |||| Sbjct 94566 AGGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGG 94625 Query 181999 TGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGG 182058 | || | || | || ||||| |||| || ||||| |||||| | | | |||| || Sbjct 94626 CGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGG 94685 Query 182059 TGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAAT 182118 ||| |||||||| ||| | || || | ||||||||| ||||||| |||||||| Sbjct 94686 TGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAAT 94745 Query 182119 GGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTG 182178 ||| || || |||||||| ||||| || || || || ||||| ||| |||||| | || Sbjct 94746 GGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTG 94805 Query 182179 GTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTAT 182238 ||| |||||||||||| | ||||| || || | ||| | |||| || | |||| | Sbjct 94806 GTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGT 94865 Query 182239 TATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATC 182298 | ||||| ||||| ||||| ||||| |||||||| || || || ||||| | ||| | Sbjct 94866 AGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGC 94925 Query 182299 AGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCG 182358 |||| || || || ||||| |||||||| || || ||||| || || |||||| | || Sbjct 94926 GAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCG 94985 Query 182359 TGCATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATT 182418 | | ||| | || | ||||| || ||||| ||| || | ||||||||||| || | Sbjct 94986 TCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 95045 Query 182419 ACCCAGAGGTAACGCACT 182436 ||| | || ||||| || Sbjct 95046 GCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 138 bits (152), Expect = 1e-27 Identities = 281/411 (68%), Gaps = 5/411 (1%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | ||||||| | || ||||| || | |||| || || ||| ||||| Sbjct 238555 TGGGGTTACTTCTGA-ACTGTATAACCAGCACTGAAAACCATCTTTACATCGAATGGTTT 238497 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || ||| | ||| | |||||| |||| || || ||| |||| Sbjct 238496 GGTGTTTTGATGATCCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGTTGTCAT 238438 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 ||| |||| | | || || || || || |||||||| || | | || || | || Sbjct 238437 TGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTA 238378 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| |||| || || |||||||| || ||||| |||| || || ||| | | ||| Sbjct 238377 TGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTT 238318 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || | || ||||| || || ||| || ||| | || || || |||||| | | Sbjct 238317 TTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCCTTACGA 238258 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | || || | ||||| | | |||||||| ||| |||||||||| Sbjct 238257 GCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACT 238198 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTC 180147 | || || |||||||||||||| ||||| ||| || |||||||| |||| Sbjct 238197 TAGTTTCCGTTTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTC 238148 >seq1443 Length=413265 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||| || ||| Sbjct 387536 TTCCTCAGTAGCTCAGTGGTAGAGCGGCCGGCTGTTAACTGACTGGTCGTAGGCTCGAAT 387595 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 387596 CCTACTTGGGGAG 387608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610272378242280