Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2265 295 8e-75 seq1633 105 8e-18 seq11 89.7 6e-13 seq2468 86.0 7e-12 seq1997 86.0 7e-12 seq50 86.0 7e-12 >seq2265 Length=185284 Score = 295 bits (326), Expect = 8e-75 Identities = 552/812 (68%), Gaps = 22/812 (3%) Strand=Plus/Plus Query 170755 TGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTT 170814 |||| || ||||| |||||||||||||| ||| |||||||| ||| | || ||| Sbjct 94278 TGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTC 94337 Query 170815 TATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAAT 170874 | |||| ||||| || |||| || || ||||| |||||||||||||| | |||| Sbjct 94338 TGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAAT 94397 Query 170875 TTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTA 170934 |||| | || || |||| || ||||||| || ||| || ||||||||| | | Sbjct 94398 TTGAACTTGCTCGATTTGTTCAATTC-GACCTTATAATGCAATCACATTCTCTGTTCCAA 94456 Query 170935 TCGCAGTCTTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCG 170994 | ||||| || | | || ||||| |||||||| |||||| |||||||||| | Sbjct 94457 TTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTG 94516 Query 170995 CACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACA 171054 | || || ||||| ||||| || ||||| | ||| | || | ||||| || || | Sbjct 94517 CGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATA 94576 Query 171055 ACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTAT 171114 | ||||||||||||||||| || ||||| |||| || || | || | || | Sbjct 94577 ATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTC 94636 Query 171115 TATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATA 171174 |||| || ||||||||||| || ||| | || || || | ||||| || Sbjct 94637 TATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAG------------ATG 94684 Query 171175 CTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAA 171234 |||| | |||| |||||| ||| ||| | || || || | |||||| Sbjct 94685 GTGAT-----GGTGCAAA----TACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAA 94735 Query 171235 CTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTA 171294 |||| ||| | || || ||| | || ||||| || |||||||| |||||||| || | Sbjct 94736 CTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCA 94795 Query 171295 ACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCAT 171354 | ||| | | ||||| ||| ||||||| || || || || | ||| | |||| Sbjct 94796 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCG 94855 Query 171355 CTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGA 171414 || | || | || ||||| || || ||||| | || || || || || ||||| || | Sbjct 94856 CTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAA 94915 Query 171415 TAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATG 171474 | | ||||| |||| || || || |||||||||||||| || ||||| || | || | Sbjct 94916 TTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACG 94975 Query 171475 AAGGTATGAGAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAG 171534 ||||||| | | |||||| | | || || || ||||| ||| | ||||||| | Sbjct 94976 AAGGTATTCGTCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 95035 Query 171535 AAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 | || || | || | || ||||| |||||| Sbjct 95036 AGGAGGTTCTGCCCCGTGGAAACGCTCTTTAA 95067 >seq1633 Length=412253 Score = 105 bits (116), Expect = 8e-18 Identities = 241/358 (67%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 169447 TGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCA---GCAGCATGTTTCATCGTT 169503 |||||||||||| | ||||| || ||| | || ||| | | || | | |||||| Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGTT 238443 Query 169504 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCT 169563 | ||||||| | ||| | | ||||| ||||| || | ||||| || | | ||| Sbjct 238442 G---TCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCT 238386 Query 169564 TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGA 169623 | || ||||| |||| || || |||||||| || |||| | || ||||| || Sbjct 238385 CTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGT 238326 Query 169624 CTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGT 169683 | | ||| ||||| | || ||||| || | |||| ||||||||| || ||||| || Sbjct 238325 TTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGT 238266 Query 169684 CCTTATCAGTTGGTAATCTTCCAC-TTCCTTA-TTGGTATCTCAGCATACATGGGAAGAC 169741 ||||| || | | | ||| || || ||| |||| | | |||||||| | Sbjct 238265 CCTTACGAGCT--AATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTA 238208 Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGC 169799 |||||||||| | | | || || ||||| |||||||| ||||||||| || || Sbjct 238207 AGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 238150 >seq11 Length=1586642 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || |||||||| ||||| || |||| ||||||||||| ||||| ||||| ||||| Sbjct 393787 TGGAGCTGATGTATGCCATCTTAATCTACACAAAACATTCTGCATTCCTCATGGGGGTGG 393728 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | || ||||| ||||| Sbjct 393727 TGGTCCTGGCATGGGCCCTATCGGTGT 393701 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 |||||||| |||||| || || || || ||||| || ||||||||||| || ||| Sbjct 397051 GAGAATCCGGCTTGGTATACGCAATATACCCCTTATCAGGCCGAGATATCTCAAGGGAGA 396992 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | || |||| ||||||||||||| | || || || || || || || ||||| | Sbjct 396991 CTTGAGTCTTTGCTCAATTACCAAACAATGATTACTGATCTCACTGGTTTGCCAATGTCG 396932 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || | | ||||| | |||||| || || || |||||| Sbjct 396931 AATGCTTCATTGCTTGATGAGGGAACTGCTGCGGCTGAGGCAATG 396887 >seq2468 Length=201513 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || |||||||| ||||| || |||| ||||||||||| ||||| || || ||||| Sbjct 146712 TGGAGCTGATGTATGCCATCTTAATCTACACAAAACATTCTGCATTCCTCACGGGGGTGG 146771 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | || ||||| ||||| Sbjct 146772 TGGTCCTGGCATGGGCCCTATCGGTGT 146798 >seq1997 Length=298448 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || |||||||| ||||| || |||| ||||||||||| ||||| || || ||||| Sbjct 191156 TGGAGCTGATGTATGCCATCTTAATCTACACAAAACATTCTGCATTCCTCACGGGGGTGG 191097 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | || ||||| ||||| Sbjct 191096 TGGTCCTGGCATGGGCCCTATCGGTGT 191070 >seq50 Length=699858 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| || |||||||| ||||| || |||| ||||||||||| ||||| || || ||||| Sbjct 260195 TGGAGCTGATGTATGCCATCTTAATCTACACAAAACATTCTGCATTCCTCACGGGGGTGG 260136 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | || ||||| ||||| Sbjct 260135 TGGTCCTGGCATGGGCCCTATCGGTGT 260109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579094734710880