Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2265 457 1e-123 >seq2265 Length=185284 Score = 457 bits (506), Expect = 1e-123 Identities = 581/798 (73%), Gaps = 1/798 (0%) Strand=Plus/Plus Query 169522 ACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCA 169581 ||| || || | || ||||||||||| ||||||||||| ||||| ||| |||||||| Sbjct 94267 ACATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCA 94326 Query 169582 ATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCAT 169641 ||| |||||||| |||| ||||| || || || || | || | | | || |||||||| Sbjct 94327 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCAT 94386 Query 169642 GCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATT 169701 ||| | || |||||| | || || || || || || ||||||||||| || |||| Sbjct 94387 GCTACGTCAATTTGAACTTGCTCGATTTGTTCA-ATTCGACCTTATAATGCAATCACATT 94445 Query 169702 CTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTC 169761 ||||| ||| ||||| || ||||| ||| || || || || ||||| || ||||| Sbjct 94446 CTCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGG 94505 Query 169762 ATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCA 169821 ||||||||||| || ||||| ||| |||| || || | ||| | | || | || Sbjct 94506 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCA 94565 Query 169822 AGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGG 169881 ||| || || || ||||| ||||||||||| || || ||||| || | || | ||||| Sbjct 94566 AGGGTTTCATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGG 94625 Query 169882 CGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGG 169941 || || | || | ||||| ||||||| ||| || || || || || | |||||| || Sbjct 94626 CGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGG 94685 Query 169942 TGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTAT 170001 ||| |||||||| ||| | || ||| | | || || | |||| |||||||| || Sbjct 94686 TGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAAT 94745 Query 170002 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTG 170061 ||||||||| |||||||| ||||| || || || || ||||| ||||| || || ||||| Sbjct 94746 GGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTG 94805 Query 170062 GCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCAT 170121 | | ||||| || ||||| ||||| || || | ||| | |||| | || | || | Sbjct 94806 GTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGT 94865 Query 170122 TATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGC 170181 | || || ||||| || || ||||| || || ||||| |||||| || | ||||| Sbjct 94866 AGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGC 94925 Query 170182 AGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCG 170241 ||||||| ||||||||||| |||||||||||||| || ||||| || ||||| |||| Sbjct 94926 GAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATTCG 94985 Query 170242 TGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCT 170301 | | ||| |||| || ||||| || ||||||||| | || ||||| || || ||||| Sbjct 94986 TCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCT 95045 Query 170302 TCCGAGAGGTAACGCACT 170319 || | || ||||| || Sbjct 95046 GCCCCGTGGAAACGCTCT 95063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574356500737560