Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2265 475 4e-129 seq1633 143 3e-29 >seq2265 Length=185284 Score = 475 bits (526), Expect = 4e-129 Identities = 607/834 (73%), Gaps = 3/834 (0%) Strand=Plus/Plus Query 165374 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 165433 || || |||||||||||||| | | | | | |||||| | || | || |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 165434 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 165493 ||||| || ||||| ||||| | ||| ||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 165494 GCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG- 165552 || || ||||| |||||| ||||| ||||||||||| ||||| |||||| | || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 165553 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 165612 | | || || || || || ||||| || | ||||||| ||| || || |||||||| Sbjct 94412 TTTGTTCA--ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGT 94469 Query 165613 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 165672 | || || || || || || |||||||| || ||||||| || || || ||| || Sbjct 94470 TTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 94529 Query 165673 GGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAA 165732 || ||||| || || | ||| | ||||| | ||||| || ||||| ||||| ||||| Sbjct 94530 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 94589 Query 165733 TCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCA 165792 ||| |||||||| ||||| |||| ||| | |||| | ||| | || | || || || Sbjct 94590 TCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCA 94649 Query 165793 TGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGC 165852 ||||| ||| || || |||||| | | | |||||||||| | ||||||||| ||| | || Sbjct 94650 TGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGC 94709 Query 165853 ATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTC 165912 ||| || | ||||||| ||||||| || |||||||| ||||| ||||| || ||||| Sbjct 94710 TTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 94769 Query 165913 TCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 165972 || || || || ||||| ||| ||||| | ||||| |||||||||||| | ||||| Sbjct 94770 CCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 94829 Query 165973 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 166032 || || | ||| | |||| || | |||| | | ||||| ||||| ||||| || Sbjct 94830 ACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACG 94889 Query 166033 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTT 166092 ||| |||||||| || || || || || | ||||| |||| || || ||||| || || Sbjct 94890 TGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTT 94949 Query 166093 CTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCA 166152 |||||| ||||| ||||| || || |||||| ||||| ||||| |||| | ||||| Sbjct 94950 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCA 95009 Query 166153 ACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 || ||||| ||| || | |||||||| || |||||||| | || ||||| || Sbjct 95010 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 143 bits (158), Expect = 3e-29 Identities = 249/356 (70%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 163830 TGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACCATCTGT-TTCATCGTCGC 163888 ||||| || ||| ||||||||||||| | | | ||||| ||||| || || ||| Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGT 238444 Query 163889 CTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCT 163948 || | ||| |||| | | || || || |||||||||||||||||| | | || || Sbjct 238443 TGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCT 238384 Query 163949 CATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCGTCCAATGCAATTGGTCT 164008 | ||||| |||| || || |||||||| || |||| | || || || ||| | Sbjct 238383 ATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTT 238324 Query 164009 TCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCC 164068 | ||| ||||| | || ||||| || ||| ||| ||||||| | ||||| || |||| Sbjct 238323 GCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCC 238264 Query 164069 TTTCCAACTTGTCGTCTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAG 164126 || | | || | || | || || | | | ||| || || |||||||| ||| || Sbjct 238263 TTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCT-TG-TTACATGGGCCGTAAG 238206 Query 164127 TGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGC 164182 |||||||| || |||| | |||||||| ||||||||| |||||| || || || Sbjct 238205 TGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556811277841080