Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2265 286 4e-72 seq11 82.4 9e-11 >seq2265 Length=185284 Score = 286 bits (316), Expect = 4e-72 Identities = 549/812 (68%), Gaps = 22/812 (3%) Strand=Plus/Plus Query 173177 TGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGAC 173236 |||| || ||||| |||||||||||||| || ||||||| ||| | || || | Sbjct 94278 TGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTC 94337 Query 173237 TATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGT 173296 | |||| ||||| || |||| || || ||||| |||||||||||||| ||||| | Sbjct 94338 TGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAAT 94397 Query 173297 TTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTA 173356 |||| | || || |||| || ||||||| || ||| || ||||||||| | | Sbjct 94398 TTGAACTTGCTCGATTTGTTCAATTC-GACCTTATAATGCAATCACATTCTCTGTTCCAA 94456 Query 173357 TCGCAGTCTTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCG 173416 | ||||| || | | || | || || ||||| || ||| |||||||||| | Sbjct 94457 TTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTG 94516 Query 173417 CACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACA 173476 | ||| || ||||| ||||| || ||||| | ||| | || | ||||| || || | Sbjct 94517 CGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATA 94576 Query 173477 ACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTAC 173536 | ||||||||||||||||| || ||||| |||| || || | || | || | | Sbjct 94577 ATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTC 94636 Query 173537 TATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATA 173596 |||| || ||||||||||| || ||| | || || || | ||||| || Sbjct 94637 TATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAG------------ATG 94684 Query 173597 CTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAA 173656 ||| ||| | | || ||| || ||| | || || || | |||||| Sbjct 94685 GTGATGGT---------GCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAA 94735 Query 173657 CTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAA 173716 ||||| ||| | || || ||| | || ||||| || |||||||| || || ||||| | Sbjct 94736 CTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCA 94795 Query 173717 ACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCAT 173776 | ||| | | ||||| ||| | ||||| || ||||| || | ||| | |||| Sbjct 94796 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCG 94855 Query 173777 CCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGA 173836 | | || | || ||||| || || ||||| | || || ||||| || ||||| || | Sbjct 94856 CTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAA 94915 Query 173837 TAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATG 173896 | | ||||| ||||||| || || |||||||||||||| || ||||| || | || | Sbjct 94916 TTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACG 94975 Query 173897 AAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAG 173956 ||||||| | | |||||| | || |||||| || ||||| ||| | |||| || | Sbjct 94976 AAGGTATTCGTCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTG 95035 Query 173957 AAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 | || || | || | || ||||| |||||| Sbjct 95036 AGGAGGTTCTGCCCCGTGGAAACGCTCTTTAA 95067 >seq11 Length=1586642 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 |||||||| |||||| || || || || ||||| || ||||||||||| || ||| Sbjct 397051 GAGAATCCGGCTTGGTATACGCAATATACCCCTTATCAGGCCGAGATATCTCAAGGGAGA 396992 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | || |||| ||||||||||||| | || || || ||||| || | || || | Sbjct 396991 CTTGAGTCTTTGCTCAATTACCAAACAATGATTACTGATCTCACTGGTTTGCCAATGTCG 396932 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||| | |||||| || || || |||||| Sbjct 396931 AATGCTTCATTGCTTGATGAGGGAACTGCTGCGGCTGAGGCAATG 396887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587931333113520