Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2265 493 1e-134 seq1633 167 3e-36 seq4464 93.3 5e-14 seq6120 84.2 2e-11 >seq2265 Length=185284 Score = 493 bits (546), Expect = 1e-134 Identities = 611/834 (73%), Gaps = 3/834 (0%) Strand=Plus/Plus Query 168663 ACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 168722 || || |||||| |||||| | || | | | |||||| | || | || |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 168723 CCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTG 168782 ||||| |||||||| ||||| | ||||||||| | || || || ||| ||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 168783 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG- 168841 || || ||||| |||||| ||||| ||||||||||| ||||| |||||||| || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 168842 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 168901 | | || || || || || ||||| || | ||||||| ||| || || |||||||| Sbjct 94412 TTTGTTCA--ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGT 94469 Query 168902 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 168961 | || || || || || || |||||||| || ||||||| || || || ||| || Sbjct 94470 TTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGG 94529 Query 168962 GGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAA 169021 || |||| || || |||||| | ||||| | ||||| || ||||| |||||| |||| Sbjct 94530 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 94589 Query 169022 TCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCA 169081 |||||||||||| ||||| || | ||| | ||||| | || | || | || ||||| Sbjct 94590 TCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCA 94649 Query 169082 TGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGC 169141 ||||| ||| || || |||||| | | | |||||||||| |||||||| ||| | || Sbjct 94650 TGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGC 94709 Query 169142 ATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTC 169201 ||| || ||||| | | || || ||||||||||| ||||| ||||| || ||||| Sbjct 94710 TTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTC 94769 Query 169202 TCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGT 169261 || || ||||| ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 94770 CCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 94829 Query 169262 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 169321 || || | ||| | |||| || | |||| | | ||||| ||||| ||||| || Sbjct 94830 ACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACG 94889 Query 169322 TGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTT 169381 ||| |||||||| ||||| || || || | ||||| ||||||| || |||||||| || Sbjct 94890 TGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTT 94949 Query 169382 CTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCA 169441 ||||||||| || || || || ||||||||| ||||| | ||| | || || ||||| Sbjct 94950 CTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCA 95009 Query 169442 ACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 |||||||| ||| || | ||||||||||| || || ||||| || || || || Sbjct 95010 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 167 bits (184), Expect = 3e-36 Identities = 270/386 (70%), Gaps = 2/386 (1%) Strand=Plus/Minus Query 167103 ACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTG 167162 ||||||||| | |||| ||| || ||| ||||| || ||| ||||||||||||| || Sbjct 238532 ACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTA 238473 Query 167163 CTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGA 167221 | | |||| | ||||| || || |||| || | | | ||||| | | || || || Sbjct 238472 TTGACTGCAA-CTTCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGA 238414 Query 167222 TGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGC 167281 ||||| || ||||| ||| | | || || | ||||| |||| || || |||||||| Sbjct 238413 CGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGC 238354 Query 167282 AGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAC 167341 || ||||| ||||| ||||| ||| | | ||| || || | || ||||| || | Sbjct 238353 CATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTC 238294 Query 167342 CCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGAT 167401 | | | || ||||| |||||||| |||||| | | || | ||| | || || | | Sbjct 238293 CGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACT 238234 Query 167402 TGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCC 167461 |||| | | || ||||| ||| |||||||||| || |||| | |||||||| || Sbjct 238233 TGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCC 238174 Query 167462 CTGGATCTGTGTTGCATACTCTGCTC 167487 ||||| ||||||||| || |||| Sbjct 238173 TTGGATTGCTGTTGCATATTCAGCTC 238148 >seq4464 Length=199901 Score = 93.3 bits (102), Expect = 5e-14 Identities = 189/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 169200 TCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 169259 || || |||||||| |||| || ||||| || | | |||||||||||| | ||| Sbjct 140316 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAAAGTTAAGTACATTTCTTTATGTTATTT 140257 Query 169260 GTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 169319 || || | ||| | |||| || || || | | ||| | ||| ||||| Sbjct 140256 GTACCACTATCCGGTTTATGGATGAGCTCTCTCCAAGTAGTCAATCTAGGTCTAAACCTA 140197 Query 169320 CGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACG 169379 | |||||||| ||| |||| ||||| || | ||| | || |||| | ||||| || Sbjct 140196 CATGCTTATGTCTTCGTTTATCAAGAAATTCGTGCAACGAAATATCCTAAATTTGAAACT 140137 Query 169380 TTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGAT 169439 || ||| ||| || ||||| || ||||||||| ||| ||| ||| | | | ||| Sbjct 140136 TTTTACGTCAATAATATCCTATTAAACGAAGGTATTCATGCTTGGATGTTAATTCAAGAT 140077 Query 169440 CAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCC 169480 ||| ||||| | ||| || | ||| |||||| || || || Sbjct 140076 CAATCTCATAAAAACCTTATATTCTTTGAGGAGGTTCTACC 140036 >seq6120 Length=94228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 168007 GTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACC 168066 ||||| || ||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct 53900 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 53959 Query 168067 TTGCTGCTG 168075 | ||||||| Sbjct 53960 TAGCTGCTG 53968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560493727066800