Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2265 473 1e-128 seq1633 131 2e-25 seq6680 89.7 6e-13 >seq2265 Length=185284 Score = 473 bits (524), Expect = 1e-128 Identities = 591/806 (73%), Gaps = 7/806 (1%) Strand=Plus/Plus Query 183397 CATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAA 183456 |||||| | ||||||| ||||||||||| | ||||| || ||| || ||||| ||| Sbjct 94268 CATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAA 94327 Query 183457 CTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATG 183516 | || || || |||| |||||| || || ||||| | || | || || ||||||||| Sbjct 94328 TTAGGTGGTCTGTGGACTTTTGTTGCTCTACACGGCACTTTCGGACTAATAGGTTTCATG 94387 Query 183517 CTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTC 183576 || || || |||||||||||||| || || || || ||||| ||||| || | ||| Sbjct 94388 CTACGTCAATTTGAACTTGCTCGATTTGTTCA-ATTCGACCTTATAATGCAATCACATTC 94446 Query 183577 TCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCA 183636 |||| ||| ||||| |||||||| ||||||||| || |||||||||||||||||| Sbjct 94447 TCTGTTCCAATTGCAGTTTTTGTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGT 94506 Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGAT---TCCTATTGTTCCTT 183693 ||||||||||| |||||||| || |||||||| || ||| ||| |||| || |||| Sbjct 94507 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCC-- 94564 Query 183694 CAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 183753 ||||||| || || ||||| || || || || ||||| |||||||||| ||| || | Sbjct 94565 AAGGGTTT-CATAATTGGACATTGAATCCATTTCATATAATGGGAGTTGACGGTGTATTG 94623 Query 183754 GGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGAT 183813 || | || || || | ||||| ||||||| || || || ||||| || | ||||||| Sbjct 94624 GGCGCTGCTCTTCTATGCGCTATTCATGGTGCTACTGTGGAAAATACTTTATTTGAAGAT 94683 Query 183814 GGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCT 183873 || || ||||| |||||| | || ||| | | ||||||| |||| || ||||| Sbjct 94684 GGTGATGGTGCAAATACATTCTATGCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCA 94743 Query 183874 ATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGT 183933 ||||| || || || || || ||||| ||||| || ||| |||| ||| |||||| ||| Sbjct 94744 ATGGTCACTGCTAACCGCTTTTGGTCCCAAATATTTGGGATTGCTTTTTCCAATAAACGT 94803 Query 183934 TGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGC 183993 ||||| || ||||||||||| ||||| || || | ||| | ||| | || | || Sbjct 94804 TGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGA 94863 Query 183994 ATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCA 184053 | | || || ||||| || || ||||| ||||| || || ||| || || | ||| Sbjct 94864 GTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCA 94923 Query 184054 GCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTA 184113 || ||||||| ||||||||||| |||||||| || || || || | || ||||| | Sbjct 94924 GCGAAAGATCCCGAATTTGAGACTTTCTACACCAAAAATATTCTATTAAACGAAGGTATT 94983 Query 184114 CGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGTA 184173 ||| | ||| | || || ||||| || ||||| || ||||||| || |||||||| Sbjct 94984 CGTCCTTGGATGGCGACTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTT 95043 Query 184174 TTACCTAGAGGCAATGCTCTTTGATG 184199 | || | || || ||||||| ||| Sbjct 95044 CTGCCCCGTGGAAACGCTCTTTAATG 95069 >seq1633 Length=412253 Score = 131 bits (144), Expect = 2e-25 Identities = 252/369 (68%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 181826 TCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTG 181885 ||| || ||| ||||||||||| |||||||||| ||| | ||| | ||||| |||| Sbjct 238515 TCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT-TCTG 238457 Query 181886 T-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCG 181944 | || || | | | || | || | ||| | | ||||| |||||||| || ||||| | Sbjct 238456 TATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTG 238397 Query 181945 TAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCA 182004 | | | || || | ||||| |||| || || |||||||| || | || | || Sbjct 238396 TTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTG 238337 Query 182005 ACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGT 182064 || || ||| | | ||| ||||| | || ||||| || || ||| ||| ||| | | Sbjct 238336 TAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTAT 238277 Query 182065 ATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCTACA 182124 | || || |||||| | | || ||||| | || || | | ||| | |||| Sbjct 238276 ACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACA 238217 Query 182125 TGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCAT 182184 |||| ||| ||||||||||| || ||| || |||||||| || ||||| ||| |||| Sbjct 238216 TGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCAT 238157 Query 182185 ACTCTGCTC 182193 | || |||| Sbjct 238156 ATTCAGCTC 238148 >seq6680 Length=52110 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 183793 GAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACT 183852 |||| || || | ||||||||| || ||||| |||||| || ||| | | ||| Sbjct 10923 GAGATTATTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACT 10864 Query 183853 CAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGG 183912 |||| ||||| || ||||| ||||| || || || | || ||| | |||||||| ||| Sbjct 10863 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCACTTTTGGCCGCAAATCTTTGGG 10804 Query 183913 GTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183959 ||| || ||||| | |||||| | ||||||||||| ||||| Sbjct 10803 GTTTATTTCTTCAATATTCATTGGTTACGTTTCTTTATGTTATTTGT 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611571313416600