Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2265 482 3e-131 seq1633 170 2e-37 seq4464 87.8 2e-12 seq2690 86.0 7e-12 seq6120 82.4 9e-11 >seq2265 Length=185284 Score = 482 bits (534), Expect = 3e-131 Identities = 610/837 (73%), Gaps = 1/837 (0%) Strand=Plus/Plus Query 166341 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGT 166400 || || |||||||||||||| | || | | | |||||| | | | || |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 166401 CCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTT 166460 ||||| || ||||| ||||| | ||||| ||| | || || || ||| | |||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 166461 GCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTTGAAATCGCTCGT 166520 ||||| ||||| |||| | ||||| ||||||||||| || || |||||| | ||||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 166521 CTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTT 166580 | || ||||| || || ||||||||| | || |||| ||| ||||| || || ||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 166581 AGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGG 166640 ||| || || || || || |||||||| || ||||||| || || || ||| || Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 166641 GTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAAC 166700 || |||| || || |||||| |||| || | ||||| || || || |||||| |||| Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 166701 CCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTTTCTGCCATCCAT 166760 ||||||||||| ||||| || | ||| | | || | ||| | || | || || ||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 166761 GGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCA 166820 |||| ||| || || || ||| | | | |||||||||| |||||||| ||| | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 166821 TTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCT 166880 || || | ||||||| ||||||| ||||||||||| || || ||||||| |||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 166881 CAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTT 166940 || || || || ||||| ||| ||||| | ||||| |||||||||||| | ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 166941 CCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGT 167000 || || | ||| | |||| || | |||| | | ||||| ||||| ||||| ||| Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGT 94890 Query 167001 GCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTC 167060 || |||||||| ||||| || ||| | | ||||| | ||||| || ||||| || ||| Sbjct 94891 GCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTC 94950 Query 167061 TATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGATCAA 167120 || ||||| || ||||| || || || ||||| ||| |||||||||| ||| ||||| Sbjct 94951 TACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCAG 95010 Query 167121 CCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| | | |||||||||| |||||||| || | || |||||||| ||| Sbjct 95011 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCTTTAA 95067 >seq1633 Length=412253 Score = 170 bits (188), Expect = 2e-37 Identities = 266/377 (71%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 |||| |||||| ||| ||||| |||||| | |||||||| ||| | | || || Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| | |||| ||| |||| | | || ||||| ||||||||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | | |||||| | || || |||| || || |||||||| | |||| | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | | ||| || || | || ||||| || || | | |||||| Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| || |||||||| || | |||| | || || | | || |||||||| Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTG 238222 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 |||||||| ||| |||||||||| || ||| | |||||||| ||||||||| || Sbjct 238221 TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 238162 Query 165150 AGCATAT--AGCGCACC 165164 |||||| ||| |||| Sbjct 238161 TGCATATTCAGCTCACC 238145 >seq4464 Length=199901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 188/281 (67%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 166878 TCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTT 166937 || || ||||| || |||| ||| ||||| || | | |||||||||||| | ||| Sbjct 140316 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAAAGTTAAGTACATTTCTTTATGTTATTT 140257 Query 166938 GTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 166997 || || | ||| | |||| || || || | | ||| | ||| ||||| Sbjct 140256 GTACCACTATCCGGTTTATGGATGAGCTCTCTCCAAGTAGTCAATCTAGGTCTAAACCTA 140197 Query 166998 CGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTGAGTTTGAAACC 167057 | |||||||| ||| |||| |||||| | | ||| | | ||||| | |||||||| Sbjct 140196 CATGCTTATGTCTTCGTTTATCAAGAAATTCGTGCAACGAAATATCCTAAATTTGAAACT 140137 Query 167058 TTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGGCAACTATCGAT 167117 || || ||| || || || || || || ||||| | | |||||||| || | ||| Sbjct 140136 TTTTACGTCAATAATATCCTATTAAACGAAGGTATTCATGCTTGGATGTTAATTCAAGAT 140077 Query 167118 CAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCC 167158 ||| ||||| | | | ||||| ||| |||||||| || Sbjct 140076 CAATCTCATAAAAACCTTATATTCTTTGAGGAGGTTCTACC 140036 >seq2690 Length=503912 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087 ||||| ||||| || |||||||| | | |||| | || ||| | | || |||||| Sbjct 268579 TGGTTATACAATGGCAGTCCTTACGACCTAATTGTTCTACATTTCTTACTTGGCGTAGCT 268638 Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATT 165144 || ||||||||||||||||||||||| || ||| | |||||||| ||||| ||| Sbjct 268639 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGAATT 268695 >seq6120 Length=94228 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165683 GTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACC 165742 ||||| || |||||||||||||||||||| ||||| ||||| |||||||| || |||| Sbjct 53900 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 53959 Query 165743 TCGCTGCTGCCGA 165755 | ||||||| ||| Sbjct 53960 TAGCTGCTGTCGA 53972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563545904791680