Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1118 127 1e-24 seq4739 104 2e-17 seq596 104 2e-17 seq347 104 2e-17 seq1128 93.3 3e-14 >seq1118 Length=308725 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| |||| ||| || || ||||||||||| | || | ||| |||| || Sbjct 111797 AACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGTCCATCCTC 111856 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| || ||||| || || | |||||||||| | || | |||||||||||| Sbjct 111857 AAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTG 111916 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||||| | || | ||| | || || || | ||| ||||| || Sbjct 111917 GATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTT 111976 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| |||||||| || |||||||||||||| Sbjct 111977 TCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| || | | ||||||||| | |||| || ||||| ||||||||||| | | Sbjct 111552 CCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 111611 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || || || || || || || || || | |||||||||| | || Sbjct 111612 AGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 111671 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | |||||||||||| ||||| || || || | ||||| ||| | || Sbjct 111672 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT--TGTCGATGGTGTCAGAGCTTTC 111727 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | || ||||| || || |||||||| || |||||||||||||| Sbjct 111728 AACCTCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || || ||||||||||| || | ||| | || |||| || Sbjct 111342 ACCAAGTGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCAAGAGTGCGGCCATCTTCA 111401 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| || || || || || | ||| |||||| | || | || |||||||| Sbjct 111402 AGTTGTTTACCAGCGAAGATCAGCCTTTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 111461 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | ||| | |||||| |||| ||||||||||| Sbjct 111462 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTTATGGTTTTG 111521 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || |||||||| |||||||| Sbjct 111522 CCAGTGAGGGTTTTCACAAAAATCTGCAT 111550 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||||||| ||||| ||||| | ||| | || |||| || ||||| Sbjct 110891 GTGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCTTCAAGCTG 110950 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || ||||| || || | || |||||| | || | ||||||||||| |||||| Sbjct 110951 TTTGCCTGCAAAAATAAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCTTGAATCTT 111010 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 || || | |||| ||| ||||| || | || || ||||| || || Sbjct 111011 TGCCTTCACATTATCAATCGTATCAGAACTTTCAACCTCTAAAGTGATTGTTTTGCCAGT 111070 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 ||| || ||||||||||| ||||| Sbjct 111071 GAGGGTTTTCACAAAGATTTGCAT 111094 >seq4739 Length=93234 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 ||||||||||||| ||| || |||||||||||||| || | ||| | || |||| Sbjct 55221 AAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAGCAAGAATACGACCATCT 55162 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| || | |||||| || || | |||||||| | || | |||||||| || Sbjct 55161 TCGAGCTGCTTACTGGCAAAGATAAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCC 55102 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || | || | |||| ||||||||| | || |||||| Sbjct 55101 TGGATCTTTGCCTTCACATTGTCAATAGTTTCAGAACTCTCAACATCCAAAGTGATGGTT 55042 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || || ||||||||||||||||| Sbjct 55041 TTACCAGTAAGGGTTTTCACAAAGATCTGCAT 55010 >seq596 Length=631412 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG- 34812 |||||| ||||||||||| |||| || | || || ||||| ||||| ||||| | Sbjct 343402 TCCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 343343 Query 34813 -AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 |||| | | | || || |||||||||||||| || || || ||||||||||| || Sbjct 343342 CAAAGTCCTAC--CGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGC 343285 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | || |||||||| ||||| ||| ||| | || | || || ||| Sbjct 343284 GGGATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCC 343225 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| || || || ||||| || || ||||| ||||||||||| Sbjct 343224 ACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 343175 >seq347 Length=438793 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | |||| || ||||| ||||||||||| | ||| | || |||| || Sbjct 270838 AACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTC 270897 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| || ||||| || || | |||||| ||| | || | ||||||||| || Sbjct 270898 AAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGGATCCCCTCCTTATCCTG 270957 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| ||||| | | | ||| | || || || | ||| ||||| || Sbjct 270958 GATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACCTCAAGGGTGATGGTCTT 271017 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||||||| || |||||||||||||| Sbjct 271018 GCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||| ||||| | || || |||||||| | ||| || || || |||||||| || | Sbjct 270591 TTCCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAG 270650 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | || | || || || || || ||||| || || | | |||||||||| | | Sbjct 270651 CAAGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAG 270710 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCC 34928 | | || |||||||| ||||| ||||| || | ||||| ||| | | Sbjct 270711 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCAGAGCTC 270766 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||| || |||||||| || ||||| || || |||||||||||||| Sbjct 270767 TCAACCTCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || |||||||| ||||| || | ||| | || |||| |||||||| || || ||||| Sbjct 269945 TCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAAG 270004 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||| ||| | || | ||| |||||||| |||||| ||| || | Sbjct 270005 ATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATTT 270064 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || |||||| || | ||| ||||||||||| || | ||| || ||| Sbjct 270065 TCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGACA 270124 Query 34971 AAGATCTGCATA 34982 || ||||||||| Sbjct 270125 AAAATCTGCATA 270136 >seq1128 Length=278557 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||| | |||| || ||||| ||||| ||||| | ||| | || | || || ||||| Sbjct 246334 GTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTG 246275 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 |||||||| || || || || |||||||| | || | ||| |||||||| ||||| Sbjct 246274 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGGATCTT 246215 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 || ||| | || | || | | ||| || |||| ||| ||||| || || || Sbjct 246214 GGCCTTAACGTTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGT 246155 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | ||||||||| ||||||||||| Sbjct 246154 CAAAGTCTTCACGAAGATCTGCAT 246131 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || | |||| | | | |||| |||| ||| || || ||||| Sbjct 247005 TCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAG 246946 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | ||| |||||||| ||||||| || || Sbjct 246945 ATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTCGCCTTCAC---- 246890 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||||| || || ||| || || | ||| ||||| || || ||||| ||||| Sbjct 246889 GTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTGAGGGTCTT 246830 Query 34967 CACAAAGATCTGCAT 34981 ||| || |||||||| Sbjct 246829 CACGAATATCTGCAT 246815 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| | |||| | || | || || Sbjct 246795 ACCAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGCAAGGGTGCGCCCGTCCTCT 246736 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || ||||| || || | |||||||| | || | ||| |||||||| Sbjct 246735 AGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGG 246676 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || |||||| | || | || | | |||||| || | ||| || || || Sbjct 246675 ATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCAACCTCCAGGGTAATCGTCTTG 246616 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| |||||||||||||| Sbjct 246615 CCGGTGAGGGTCTTGACAAAGATCTGCAT 246587 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | || ||| ||||| |||||||| || | || | || | || || Sbjct 246568 AACCAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGCGAGAGTACGACCGTCCTC 246509 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| |||||||| || || |||| ||||| || | || | || |||||||| Sbjct 246508 GAGCTGCTTTCCGGCGAAGATGAGTCTCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTG 246449 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| |||||| | || | || | | ||| || |||| ||| ||||| || Sbjct 246448 GATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCGACCTCGAGGGTGATGGTCTT 246389 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || ||||||||||| Sbjct 246388 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 246359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324569081811096