Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3231 100 3e-16 seq177 91.5 2e-13 >seq3231 Length=135437 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || | | ||| || ||||| ||| Sbjct 17993 CCTCCTTGATCCACATAACGGGCAGTATCATTGAACACCCGCAGCATCGGAACAATGCCA 18052 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||||||||| ||| | || | || ||| || || Sbjct 18053 TTAGAAGTCCCATTTGTTCCACGAATATAACTACCAGTGGCACGAATGTTATGAACAGAT 18112 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| || | ||||||| ||| || |||||||| || Sbjct 18113 ACACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATATATA 18172 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| ||||| |||||| |||| Sbjct 18173 CCTTCAATACTGTCATCTTTCAT 18195 >seq177 Length=540407 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| || ||||| |||||| ||| | ||||| || ||||||||| Sbjct 101928 CAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGATATGAGCTCATTTGAGAATGTTAAA 101869 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||| ||||| || ||||||| |||||| || Sbjct 101868 CCTGGCATTAGTCCCCTCTTTTTTAGCCAGAAGAT 101834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561994221147480