Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1633 127 6e-25 seq6120 84.2 7e-12 >seq1633 Length=412253 Score = 127 bits (140), Expect = 6e-25 Identities = 273/407 (67%), Gaps = 1/407 (0%) Strand=Plus/Plus Query 5780 GCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGG 5839 ||||||||||| || |||||| || ||||| || || | | ||||||||||||| | Sbjct 238150 GCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTTA 238209 Query 5840 CGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCT 5899 || |||| |||| || | |||| | || || | || | || | ||| || | Sbjct 238210 CGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGACTG 238269 Query 5900 CCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCA 5959 |||||||| | ||||||| | | || ||||| || | || || ||| | || || Sbjct 238270 CCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAACCT 238329 Query 5960 ATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGAT 6019 || || || | || | || ||| || || || || |||||||||| | |||||| Sbjct 238330 ATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGAGAC 238389 Query 6020 CCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAAT 6079 | | || |||||||| || ||||| || || | || || | ||| | || | | Sbjct 238390 CTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAACGATA 238449 Query 6080 ATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACA 6139 |||||| ||| |||||| || || | | || ||||| || ||||||||||| | | Sbjct 238450 ATAAATACAGAAGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCATTCGATG 238509 Query 6140 TAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAACTTATCCCA 6186 || || |||| | ||||| || | |||| ||||| | | |||| Sbjct 238510 TAAAGATGGTTTTCAGTGCTGGTTATACAGT-TCAGAAGTAACCCCA 238555 >seq6120 Length=94228 Score = 84.2 bits (92), Expect = 7e-12 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 5190 CAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAA 5249 |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 53968 CAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA 53909 Query 5250 GGTTGGCAC 5258 |||| |||| Sbjct 53908 GGTTAGCAC 53900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152620040072802