Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1633 87.8 5e-13 seq402 80.6 8e-11 >seq1633 Length=412253 Score = 87.8 bits (96), Expect = 5e-13 Identities = 231/353 (65%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 26038 GCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGT 26097 |||||||| || ||| ||||| || | ||| || | | ||||||||||||| | Sbjct 238150 GCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACTTA 238209 Query 26098 CGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCA 26157 || |||| |||| | | ||| | | || || | ||||| || | || || | Sbjct 238210 CGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGACTG 238269 Query 26158 CCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCG 26217 || || || ||||| || | | || || ||||| || | ||||| ||| | | ||| Sbjct 238270 CCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAACCT 238329 Query 26218 ATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCT 26277 || || ||| | || | || || || || || || |||||||||| | || | Sbjct 238330 ATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGAGAC 238389 Query 26278 CCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATT 26337 | || ||||| ||||||||||| || ||||| | | ||| | ||||| | | || Sbjct 238390 CTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAACGATA 238449 Query 26338 AAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCA 26390 | |||| | | ||| || || | | ||||||||| | || |||||||| Sbjct 238450 ATAAATACAGAAGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCA 238502 >seq402 Length=581868 Score = 80.6 bits (88), Expect = 8e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 25455 TAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGC 25514 |||||| ||||||||||| || || ||||| |||||||||||| |||| || | || || Sbjct 365382 TAAGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTACCATACCCAGGTTAGC 365441 Query 25515 ACGGTTAAGAATGTCAGCCCAAGT 25538 | ||||| ||| |||||||| || Sbjct 365442 AAAGTTAATAATATCAGCCCATGT 365465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151964167104332