Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq1118 122 7e-23 seq347 120 2e-22 seq1128 105 5e-18 seq4739 100 2e-16 seq181 98.7 8e-16 >seq1118 Length=308725 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| || || | || ||||| ||||| |||||||| || || Sbjct 111096 CCACCCCTAAGACGAAGAACCAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCTGCA 111155 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | || ||||||||||| ||||| | ||| || ||||| || Sbjct 111156 AGAGTGCGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGTGGG 111215 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || ||| | || | || ||||| |||| || Sbjct 111216 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACC 111275 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || |||||||| | ||| || |||||||| ||||| Sbjct 111276 TCCAAAGTGATAGTCTTGCCGGTAAGAGTCTTCACAAATATTTGCAT 111322 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || |||||||| | ||| || || || || || || || || || || || || || Sbjct 111552 CCACCCCTTAAACGGAGAACCAAGTGCAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 111611 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | ||||||||| || || |||| | || || || || || Sbjct 111612 AGAGTGCGGCCATCTTCAAGTTGCTTACCAGCGAAGATCAGCCTTTGCTGGTCTGGTGGG 111671 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || ||| | || | |||||||| |||| || Sbjct 111672 ATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAGCTTTCAACC 111731 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | |||||||||||| |||||||| Sbjct 111732 TCAAGCGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 111778 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| || ||||| || ||||| ||||| || || || || || Sbjct 111780 CCACCCCTGAGACGGAGAACCAAGTGAAGTGTGGATTCCTTTTGGATGTTATAGTCAGCC 111839 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | || ||||| ||||| |||| | || || || || || Sbjct 111840 AGAGTGCGTCCATCCTCAAGCTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGTGGG 111899 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || ||| | || | |||||||| |||| || Sbjct 111900 ATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGAGCTTTCGACC 111959 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || | |||||||||||| |||||||| Sbjct 111960 TCAAGGGTGATGGTCTTTCCAGTGAGAGTTTTTACAAAGATCTGCAT 112006 >seq347 Length=438793 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||||||||| || ||||| || || | ||| | | |||| || | || Sbjct 270161 TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCAAGCTGT 270220 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || || || ||||| || ||||| || ||| Sbjct 270221 TTGCCTGCAAAGATAAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTT 270280 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || || |||||||| |||| || || | ||||| || ||||| || Sbjct 270281 GCCTTAACATTATCAACCGTGTCAGAACTTTCAACCTCTAAAGTGATTGTCTTGCCAGTA 270340 Query 101447 AAAGTTTTTACAAATATCTGCATG 101470 | ||||| ||||| || |||||| Sbjct 270341 AGGGTTTTCACAAAGATTTGCATG 270364 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || ||||| || || ||||| || | ||| | | | || || Sbjct 270611 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGAGTGCGGCCGTCTTCA 270670 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||||||| || || ||||| | || || || || || |||||||| || || || Sbjct 270671 AGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 270730 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| | || || || ||||||| |||||| Sbjct 270731 ATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTTTTG 270790 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | ||||||||||| ||||||||| Sbjct 270791 CCAGTGAGGGTTTTTACAAAGATCTGCATG 270820 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | |||||| || | || ||||| ||||| |||||||| || || Sbjct 270365 CCCCCCCTCAGACGAAGAACTAAGTGCAAAGTGGATTCCTTTTGGATATTGTAGTCCGCA 270424 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || ||||||||||| ||||| | ||| || ||||| || Sbjct 270425 AGGGTACGGCCATCTTCAAGCTGTTTACCTGCAAAAATCAACCTCTGCTGGTCGGGAGGG 270484 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || ||| | || | || ||||| |||| ||| Sbjct 270485 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCAGAACTTTCAACT 270544 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || ||||| || | ||| || ||||| || ||||| Sbjct 270545 TCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATTTGCAT 270591 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | ||| || || || || || || || || || || || || || Sbjct 270821 CCACCCCTGAGACGGAGAACCAAGTGGAGTGTGGACTCCTTCTGGATGTTATAGTCAGCA 270880 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | |||| || | || ||||| ||||| || | | || ||||| || || Sbjct 270881 AGAGTGCGGCCATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTTTGCTGATCTGGTGGG 270940 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || ||||| || || || || ||| | || || |||||||| |||| || Sbjct 270941 ATCCCCTCCTTATCCTGGATCTTGGCCTTGACATTGTCAACTGTGTCAGAGCTTTCGACC 271000 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || ||||| || | |||||||||||| |||||||| Sbjct 271001 TCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTTACAAAGATCTGCAT 271047 >seq1128 Length=278557 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||||||||| || || || || |||||||| || | || || |||| ||||| ||| Sbjct 247017 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGC 246958 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| ||||| | ||| || || || || || ||||| || || ||||| || Sbjct 246957 TTCCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCCTGAATCTTC 246898 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | ||||| || | ||||| || | |||| || ||||| || Sbjct 246897 GCCTTCACGTTATCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTG 246838 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||||||||| Sbjct 246837 AGGGTCTTCACGAATATCTGCAT 246815 >seq4739 Length=93234 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101260 AACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTC 101319 ||| || || ||||| |||| ||||| ||||||||||| || | ||| ||| | Sbjct 55675 AACAAAGTGGAGGGTCTATTCCTTTTGGATATTGTAATCAGCAAGAGTAGGACCATTTGC 55616 Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 | ||||| || | |||||| | | ||| ||||| || ||||||||||| |||||||| Sbjct 55615 AAGCTGCTTTCCAGTAAATATGAGTCTCTGCTGATCTGGTGGAATGCCTTCCTTATCTTG 55556 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 ||||| || ||| | | | ||||||| | | ||||| || | |||| ||||| Sbjct 55555 GATTTTGGCCTTCACATTGTTAATAGTGTCAAAACTCTCCACCTCTAATGTGATGGTTTT 55496 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| ||||| || Sbjct 55495 CCCAGTAAGGGTCTTGACAAAAATCTGTAT 55466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||||||| | || || | ||||| || || || | ||| || ||| | Sbjct 55446 ACCAAATGAAGGGTATACTCCTTCTAGATATTATAGTCTGCCAGAGTCCTTCAATCTTAA 55387 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||| | || |||||||| ||| | || || || || || | |||||||||| Sbjct 55386 GGCTGCTTAGCAGCGAATATCAACTTCTGCTAGTCAGGTGGGATCCCCTTTTTATCTTGA 55327 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || ||||| || | ||||||| || | |||| |||| Sbjct 55326 ATTTTAGCCTTCACATTATCAACAGTTTCTGCACTTTCCACCTCCAAGGTGATGATTTTT 55267 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || || |||||||| |||||| Sbjct 55266 CCAGTATGCGTCTTGACAAATATTTGCATG 55237 >seq181 Length=541317 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||||||| ||| | | | || || | ||| Sbjct 240856 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCTTCAAGTTGT 240797 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | || ||||| || || || |||||||| || ||||| |||||| Sbjct 240796 TTTCCAGCGAAGATGAGGCGTTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTT 240737 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | || || || | ||| || || || || | ||| || || ||| Sbjct 240736 GCCTTCACGTTGTCGATGGTATCTGAGGATTCGACCTCTAGGGTTATCGTCTTCCCCGTT 240677 Query 101447 AAAGTTTTTACAAATATCTGCATGGTT 101473 | ||||| || || |||||||||||| Sbjct 240676 AGGGTTTTCACGAAGATCTGCATGGTT 240650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396199643011599