Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq347 107 1e-18 seq1118 98.7 8e-16 seq596 93.3 3e-14 >seq347 Length=438793 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||| ||||| | ||| | || | || |||| |||||| || ||||| Sbjct 269944 CTCCTTCTGAATATTATAATCTGCAAGAGTGCGCCCATCCTCCAGCTGCTTCCCTGCAAA 270003 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| |||| || |||||||| ||||||| ||||||| Sbjct 270004 GATCAACCTCTGCTGATCTAGTGGAATCCCTTCCTTGTCCTGAATCTTTGCTTTTACATT 270063 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||| ||||| | || || |||||||| ||||||||||| || Sbjct 270064 TTCAATGGTGTCCGAACTCTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTGAC 270123 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 270124 AAAAATCTGCAT 270135 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| ||||||| ||||| || || ||| ||| ||||| || || ||||||| Sbjct 270593 CCACCCCTGAGCCGCAGGACCAAGTGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCA 270652 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || |||| || | ||||||||||| || |||| | || || || | || Sbjct 270653 AGAGTGCGGCCGTCTTCAAGTTGCTTACCGGCGAAGATCAACCTTTGCTGGTCTGGAGGG 270712 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||||| || ||| | | | || || ||| ||| Sbjct 270713 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACC 270772 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||||||||||| |||||||| Sbjct 270773 TCGAGAGTGATGGTTTTGCCAGTGAGGGTTTTTACAAAGATCTGCAT 270819 >seq1118 Length=308725 Score = 98.7 bits (108), Expect = 8e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| ||||| | ||| | || | || |||| |||||| || ||||| Sbjct 110675 CTCCTTCTGGATATTATAATCTGCAAGAGTACGCCCATCCTCCAGCTGCTTCCCCGCAAA 110734 Query 48635 TATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAG 48693 |||| | ||| || || | ||||| | || |||||||| ||||||| || ||| Sbjct 110735 GATCAACCTCTGCTGGTCTGGTGGGATC-CCTTCCTTGTCCTGAATCTTTGACTTAACAT 110793 Query 48694 AACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | | || || ||| ||||| | || || |||||||| ||||||||||| | Sbjct 110794 TATCAATGGTGTCCGAACTCTCAACCTCAAGAGTGATAGTTTTTCCAGTCAAAGTTTTAA 110853 Query 48754 CAAAAATCTGCAT 48766 ||||||||||||| Sbjct 110854 CAAAAATCTGCAT 110866 >seq596 Length=631412 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || | || |||||||| ||| ||||| ||| || || || ||||| || | Sbjct 343401 CCTCCTCTCAACCTCAACACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 343342 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | | |||| || | ||| || ||||| || || || || || || |||| || Sbjct 343341 AAAGTCCTACCGTCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGCTGGTCCGGCGGG 343282 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| ||| || | | | || || | ||||||| Sbjct 343281 ATGCCTTCCTTGTCTTGGATCTTTGCTTTCACGTTGTCAATGGTGTCCGAGGACTCCACC 343222 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| || ||||| || ||||| | ||||| || || |||||||| ||| Sbjct 343221 TCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATTGTG 343171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380861891866161