Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1633 114 1e-20 seq6120 84.2 2e-11 >seq1633 Length=412253 Score = 114 bits (126), Expect = 1e-20 Identities = 237/353 (67%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603 ||||| ||||| |||||||||||| || | | ||| | || || || || | Sbjct 238502 TGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACTTCTGTATTTATTATCGTT 238443 Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||||||| | ||| || | ||||| || ||||| | ||||||||| | | || || Sbjct 238442 GTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTA 238383 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 | ||||| |||| || || |||||||| | |||||| ||| ||||| ||| | Sbjct 238382 TTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTG 238323 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783 | ||| || || | || ||||| || | ||| ||| ||||| || ||||| | ||| Sbjct 238322 CGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATGGTTATACAATGGCAGTCCT 238263 Query 162784 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 162843 | | | || | || | || || | | || | | ||| || ||| ||||| Sbjct 238262 TACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGG 238203 Query 162844 GAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGC 162896 |||||| || ||| || |||||||| |||||||| ||||||||| || || Sbjct 238202 GAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGC 238150 >seq6120 Length=94228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 163426 CTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 |||||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 53908 CTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 53967 Query 163486 G 163486 | Sbjct 53968 G 53968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552972060577080