Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2265 455 4e-123 seq1633 105 8e-18 >seq2265 Length=185284 Score = 455 bits (504), Expect = 4e-123 Identities = 606/841 (72%), Gaps = 7/841 (1%) Strand=Plus/Plus Query 164787 ACAGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 164846 || || || || || || ||| || || | | | |||||| | | |||| |||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 164847 CCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTG 164906 ||||| | || || |||| || ||||| ||| | || || || |||| ||| || Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 164907 GCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGT 164966 ||||| ||||| | |||| ||||| ||||||||||| || || ||||| || || || Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCG- 94410 Query 164967 CTCATTGGT---ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 165023 ||| || || || ||||| ||||| || | ||||||| ||| ||||| |||||| Sbjct 94411 ---ATTTGTTCAATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTT 94467 Query 165024 GTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 165083 || || ||||| || || |||||||||||||| ||||||| || || || ||| Sbjct 94468 GTTTCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 94527 Query 165084 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTC 165143 || || ||||| || ||| ||||| | | || | ||||| || || || ||||| | Sbjct 94528 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 94587 Query 165144 AACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATT 165203 || || || ||||| ||||| |||| ||| | ||||| | || | |||| |||||| Sbjct 94588 AATCCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATT 94647 Query 165204 CATGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAG 165263 ||||| | || || |||||||| |||| || ||||| || |||||||| || | Sbjct 94648 CATGGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTAT 94707 Query 165264 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 165323 || ||| | | || || | |||| |||||||| ||||||||||| |||||||| ||| Sbjct 94708 GCTTTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 94767 Query 165324 TCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 165383 || || || || || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 94768 TCCCAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 94827 Query 165384 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTT 165443 || || || | ||| | |||| | || | || | | ||||| ||||| ||||| Sbjct 94828 GTACCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTA 94887 Query 165444 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 165503 ||||| || || ||||| |||||| || | ||||| ||||||| ||||||||||| Sbjct 94888 CGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACT 94947 Query 165504 TTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 165563 |||||||||||||| || ||||| || ||||| | ||| ||||| |||| || ||| Sbjct 94948 TTCTACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGAT 95007 Query 165564 CAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAA 165623 || || ||||||||| |||| ||||| || || || |||| | || ||||| |||||| Sbjct 95008 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCTTTAA 95067 Query 165624 T 165624 | Sbjct 95068 T 95068 >seq1633 Length=412253 Score = 105 bits (116), Expect = 8e-18 Identities = 248/372 (67%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 162919 AACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACT 162978 |||| || || ||| ||||| || || ||||||| || ||| | ||| | |||||| Sbjct 238520 AACCATCTTTACATCGAATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACTGCAACT 238461 Query 162979 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGA 163037 ||||| || || ||| || | ||| |||| | | || |||||||| || ||||| Sbjct 238460 -TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAATAGATATTGACGGTATTCGTGA 238402 Query 163038 GCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATC 163097 || || | | || || | ||||| |||| || || |||||||| || |||| | Sbjct 238401 ACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTATTTCTGGTGCCATTATTCCTAC 238342 Query 163098 TTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTG 163157 ||| || || ||| | | ||| || || | || ||||| || || ||| ||| || Sbjct 238341 TTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAGAAGCGGCGTCCGTTGCTGAATG 238282 Query 163158 GCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGC 163217 | | || || || |||||| | | || | || | || || | | ||| | | Sbjct 238281 GTTATACAATGGCAGTCCTTACGAGCTAATTGTTCTACATTTGTTACTTGGCGTAGCTTG 238222 Query 163218 ATATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGT 163277 || ||||| ||| | ||||||||| | || || ||||||||||| ||||| ||| Sbjct 238221 TTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGT 238162 Query 163278 AGCATACTCTGC 163289 ||||| || || Sbjct 238161 TGCATATTCAGC 238150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563094796763160