Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq339 150 3e-31 >seq339 Length=880584 Score = 150 bits (166), Expect = 3e-31 Identities = 377/568 (66%), Gaps = 11/568 (2%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| ||||| || | |||||| |||||||| || | | | ||||||||||| ||| Sbjct 293132 GCACGCAAAATCGCAGTGCAAACCTTCGTCACGTGACACCAACTCGTTGGAGAAGGTGAG 293191 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||||| |||| || || ||||| || || | ||| || |||||||| Sbjct 293192 TCCTGGCATGAGACCCCGCTTCTTCAGCCAAAATATGGAGCAGAAGCTCCCGGAGAAGAA 293251 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 ||| || ||||| || || ||| || |||||| |||| | || ||| Sbjct 293252 GATCCCTTCCACGCAAGCAAAGGCGACGATCCTCTCGGCGAAGGTCTCGGAGCTGT---T 293308 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCG 48369 |||||| | ||||| || |||||| | | ||| |||| |||||| ||||| | Sbjct 293309 GATCCACTTGATGGCCCAATCCGCCTTCCTGGCCACGCACGGCACCGTCTCGATGGCGTG 293368 Query 48370 GAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 ||||| | | |||| || ||| |||| | ||||| |||||| ||| Sbjct 293369 GAAGAGGCGGTGCTTGACCT---CTGAGTCCTTGATGTAGGTCTCGAGCAGGAGACTGTA 293425 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 |||||| ||||| | ||||| || ||||||||||| ||||||||||| | |||||| Sbjct 293426 CATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGC 293485 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAG 48545 ||||| | || || ||| | || || || ||||| ||| || || || || | Sbjct 293486 GACCTGGATCTCGGTCATGAAAC-GGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGG 293544 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | || |||||||| |||| || | ||| ||| ||||| | |||| | || | || Sbjct 293545 CGGCGAAGAAGGCGAGGATGTGAGAGATGAAGTGGGTCTCGTCGGGGGTTAAGGCTTCCC 293604 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | ||| | | || || || || || | ||||||||||| || || | Sbjct 293605 AGTGGCGGGTGTCCTGGGAGAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCT 293664 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | |||||||| |||| || ||||| || Sbjct 293665 TCTTGTACATCTCCCAGATTTCCGGGTA 293692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931342918682880