Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq2265 439 3e-118 seq1633 161 1e-34 seq6543 109 6e-19 seq2257 109 6e-19 seq2449 82.4 8e-11 >seq2265 Length=185284 Score = 439 bits (486), Expect = 3e-118 Identities = 598/833 (72%), Gaps = 1/833 (0%) Strand=Plus/Plus Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || |||||||||||||| | | | | | |||||| | || | ||||||||| Sbjct 94232 ACCGCCGCAGTTTCTACTCCTACTAATAGTTTAGCACATTCTTTGTTGTTACTATGGGGT 94291 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 ||||| | ||||| || || | || ||||| ||| | || || || ||||||||||| Sbjct 94292 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 94351 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || || ||||| | || | ||| |||||||||||||| || || |||||||| || ||| Sbjct 94352 GCTCTACACGGCACTTTCGGACTAATAGGTTTCATGCTACGTCAATTTGAACTTGCTCGA 94411 Query 162477 CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTT 162536 || | ||||| ||||| ||||| || | ||||| | ||| ||||| || || ||| Sbjct 94412 TTTGTTCA-ATTCGACCTTATAATGCAATCACATTCTCTGTTCCAATTGCAGTTTTTGTT 94470 Query 162537 AGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGG 162596 ||| || || || ||||| |||| || || |||||||| || || || || Sbjct 94471 TCTGTATTCCTGATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 94530 Query 162597 GTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAAT 162656 || ||||| || || |||||| | ||||| |||||||||| ||||| ||||| | ||| Sbjct 94531 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAT 94590 Query 162657 CCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCAT 162716 || ||||| || ||||| || | ||| | | || | ||| | || | ||||||||| Sbjct 94591 CCATTTCATATAATGGGAGTTGACGGTGTATTGGGCGCTGCTCTTCTATGCGCTATTCAT 94650 Query 162717 GGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCA 162776 || | || || |||||||| | | |||||||| || ||||| || || | || Sbjct 94651 GGTGCTACTGTGGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCTATGCT 94710 Query 162777 TTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCA 162836 ||| || | || || | ||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 94711 TTTAACCCAACTCAAGCTAAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCC 94770 Query 162837 CAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTT 162896 || || || || ||||||||| || || |||||||| |||||||||||| | ||||| Sbjct 94771 CAAATATTTGGGATTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTA 94830 Query 162897 CCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGT 162956 || || | ||| | |||| || || |||| | | || || ||||| || || ||| Sbjct 94831 CCAGTAACCGGTTTATGGATGAGCGCTCTCGGAGTAGTCGGTCTGGCTCTGAACCTACGT 94890 Query 162957 GCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTC 163016 || || ||||| || ||||| ||| ||||||| || |||| || || |||||||| ||| Sbjct 94891 GCCTATGACTTCGTTTCTCAGGAAATTCGTGCAGCGAAAGATCCCGAATTTGAGACTTTC 94950 Query 163017 TATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAA 163076 || || || || ||||| | || ||||| |||| | ||| | || | || || Sbjct 94951 TACACCAAAAATATTCTATTAAACGAAGGTATTCGTCCTTGGATGGCGACTCAAGATCAG 95010 Query 163077 CCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 |||||||| ||| || | |||||||| ||||| |||| | || |||||||| Sbjct 95011 CCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTGCCCCGTGGAAACGCTCT 95063 >seq1633 Length=412253 Score = 161 bits (178), Expect = 1e-34 Identities = 279/398 (70%), Gaps = 8/398 (2%) Strand=Plus/Minus Query 160882 AACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATT 160941 ||||| | |||||||| || |||| ||||| | | ||||| || || ||||||| Sbjct 238541 AACTGTATAACCAGCACTGAAAACCATCTTTACATCGAATGGTTTGGTGTTTTGATGAT- 238483 Query 160942 CCCTGCTTGCTCG-CTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTG 160999 |||| ||| | | |||| || | ||| || || || | || ||| | |||| | Sbjct 238482 CCCTACTTTATTGACTGCAACT-TCTGTATTTATTATCGTTGTCATTGCTACTCCTTCAA 238424 Query 161000 TGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCA 161059 | || || ||||| ||||||||||| || | | || || | |||||||||| || | Sbjct 238423 TAGATATTGACGGTATTCGTGAACCTGTTTCCAGGTCTCTATTTTATGGAAACAGTATTA 238364 Query 161060 TCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGG 161119 | |||||||| |||| ||| ||||| ||||| ||| ||| ||| ||||| | || | Sbjct 238363 TTTCTGGTGCCATTATTCCTACTTCTGTAGCTATAGGTTTGCGCTTTTACCCGAGATGAG 238304 Query 161120 AAGCAGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTT 161177 |||| || ||| | | |||||| | ||||| || |||||| | | || |||| | Sbjct 238303 AAGCGGC--GTCCGTTGCTGAATGGTTATACAATGGCAGTCCTTACGAGCTAATTGTTCT 238246 Query 161178 CCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCT 161237 || || | ||||| | | ||||||||| ||| ||||||||||| || |||| | Sbjct 238245 ACATTTGTTACTTGGCGTAGCTTGTTACATGGGCCGTAAGTGGGAACTTAGTTTCCGTTT 238186 Query 161238 GGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTC 161275 ||| ||||| ||||||||| || ||||| || |||| Sbjct 238185 GGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 238148 >seq6543 Length=70685 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||| | || ||||||||| | || || |||| || || || ||||| || || Sbjct 60138 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 60197 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||| || | ||||| || || | || || || || || ||||| || ||| Sbjct 60198 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 60257 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || ||| | ||||| | |||| | | |||||||||||||| || || || Sbjct 60258 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 60317 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 |||||||||||| | ||| ||||||||| ||||| |||||| Sbjct 60318 TCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 60362 >seq2257 Length=219887 Score = 109 bits (120), Expect = 6e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||| | || ||||||||| | || || |||| || || || ||||| || || Sbjct 145927 TACATCTTAGATGCAGCTGAGAATGCTGGAATCGAGCTGCCCTATTCTTGCCGAGCTGGG 145868 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 ||||| || | ||||| || || | || || || || || ||||| || ||| Sbjct 145867 GCTTGCTCCACCTGTGCCGGTAAGATGGTATCAGGTACAGTGGACCAGTCTGATGGTTCC 145808 Query 158461 TTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCTACA 158520 ||||| || ||| | ||||| | |||| | | |||||||||||||| || || || Sbjct 145807 TTCCTTGATGATAATCAAATGAAAGAGGGTTACCTGCTGACTTGTGTTTCATACCCAACT 145748 Query 158521 AGTGATTGTGTGATTGAGACTGACAAGGAAGAGGAACTGTATTGA 158565 |||||||||||| | ||| ||||||||| ||||| |||||| Sbjct 145747 TCAGATTGTGTGATTCACACTCACAAGGAAGGTGAACTTTATTGA 145703 >seq2449 Length=184613 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 157691 GGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAAT 157750 ||| |||||||||||||||||||||| ||| |||||| ||| | ||| | ||||| ||| Sbjct 34638 GGGATGTAGCGCAGCTTGGTAGCGCGTTTGTTTTGGGTACAAAATGTCACGGGTTCAAAT 34697 Query 157751 CCTGTCACCCCGACTTAT 157768 ||||||| ||| || ||| Sbjct 34698 CCTGTCATCCCTACCTAT 34715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547635548580120