Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephalotus_20follicularis_20[genbank_20GCA_5F001972305.1_202017-01- 11] 16,307 sequences; 1,614,517,073 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2265 470 2e-127 seq1633 109 7e-19 seq6543 93.3 5e-14 seq2257 93.3 5e-14 seq4464 84.2 3e-11 seq6680 82.4 1e-10 seq1746 82.4 1e-10 >seq2265 Length=185284 Score = 470 bits (520), Expect = 2e-127 Identities = 583/797 (73%), Gaps = 1/797 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | |||| ||||| ||||| |||| || ||||||||| || ||||| Sbjct 95063 AGAGCGTTTCCACGGGGCAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 95004 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| | ||| | |||||| || ||||| || || || |||||||| ||| Sbjct 95003 TGAGTCGCCATCCAAGGACGAATACCTTCGTTTAATAGAATATTTTTGGTGTAGAAAGTC 94944 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || ||||||| ||||| | || || || || || |||||||| ||||| ||| Sbjct 94943 TCAAATTCGGGATCTTTCGCTGCACGAATTTCCTGAGAAACGAAGTCATAGGCACGTAGG 94884 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| ||||| | | |||| | || |||| | ||| | || || ||||| Sbjct 94883 TTCAGAGCCAGACCGACTACTCCGAGAGCGCTCATCCATAAACCGGTTACTGGTACAAAT 94824 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| ||||| ||||| ||||| ||||| Sbjct 94823 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAATCCCAAATATTTGGGACCAA 94764 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| |||| |||| || | | || || | | Sbjct 94763 AAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTTAGCTTGAGTTGGGTTAAAAGCATAG 94704 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || |||||||| |||| || || Sbjct 94703 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCCACAGTAGCACCATGAATA 94644 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || || || | |||| | ||| |||| ||||| ||||| ||||| || | Sbjct 94643 GCGCATAGAAGAGCAGCGCCCAATACACCGTCAACTCCCATTATATGAAATGGATTCAAT 94584 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| ||||| |||||||| Sbjct 94583 GTCCAATTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAA 94524 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 94523 CTAGGCGCAAAGAACCAACCAGACTGACCCAGTGGATAAATCAGGAATACAGAAACAAAA 94464 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 || || || || ||||||| | || ||||| || || |||||| || || | ||| Sbjct 94463 ACTGCAATTGGAACAGAGAATGTGATTGCATTATAAGGTCGAATT-GAACAAATCGAGCA 94405 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| ||||||||||| || || | || | ||||| ||||| |||||| Sbjct 94404 AGTTCAAATTGACGTAGCATGAAACCTATTAGTCCGAAAGTGCCGTGTAGAGCAACAAAA 94345 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 | ||| || || || | ||| ||| | ||||||||||| |||||||||||||| Sbjct 94344 GTCCACAGACCACCTAATTGACACCAACGAGTAAAATCTCCTTGTGCTTCAGGACCCCAT 94285 Query 102490 AGTAGAAGAAGAGAATG 102506 |||| | | |||||| Sbjct 94284 AGTAACAACAAAGAATG 94268 >seq1633 Length=412253 Score = 109 bits (120), Expect = 7e-19 Identities = 250/374 (67%), Gaps = 2/374 (1%) Strand=Plus/Plus Query 103758 GAGCAGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACT 103817 |||| || ||||| ||| ||||| |||||||| |||| |||| | | |||||||| Sbjct 238148 GAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAAACGGAAACTAAGTTCCCACT 238207 Query 103818 CACGTCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGAC 103877 ||| ||||| || | | ||||| | || || | || | || | | |||||| Sbjct 238208 TACGGCCCATGTAACAAGCTACGCCAAGTAACAAATGTAGAACAATTAGCTCGTAAGGAC 238267 Query 103878 CACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGAC 103937 || || || | ||| ||| ||| || || ||||| || | || || ||| | | || Sbjct 238268 TGCCATTGTATAACCATTCAGCAACGGACGCCGCTTCTCATCTCGGGTAAAAGCGCAAAC 238327 Query 103938 CAATTGCGTTGGAGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTG 103997 | || || || | |||| || |||||||| || || |||| || || | || | Sbjct 238328 CTATAGCTACAGAAGTAGGAATAATGGCACCAGAAATAATACTGTTTCCATAAAATAGAG 238387 Query 103998 AACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAA 104057 | | | || ||||||||||| ||||| ||||| | | ||| | || | || | | | Sbjct 238388 ACCTGGAAACAGGTTCACGAATACCGTCAATATCTATTGAAGGAGTAGCAATGACAACGA 238447 Query 104058 CGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCA 104116 || || |||| ||||| | ||| | ||| |||||||||| ||||| ||||| | Sbjct 238448 TAATAAATACAGA-AGTTGCAGTCAATAAAGTAGGGATCATCAAAACACCAAACCATTCG 238506 Query 104117 ACATAGAGACGGTT 104130 | || ||| |||| Sbjct 238507 ATGTAAAGATGGTT 238520 >seq6543 Length=70685 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| ||||||||||||| || || ||||| | |||| ||| | ||||| ||||| Sbjct 60323 ATCTGAAGTTGGGTATGAAACACAAGTCAGCAGGTAACCCTCTTTCATTTGATTATCATC 60264 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 || ||||| ||| || || || ||||| ||| | |||||||| ||||| || || Sbjct 60263 AAGGAAGGAACCATCAGACTGGTCCACTGTACCTGATACCATCTTACCGGCACAGGTGGA 60204 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTA 102992 || || ||||| || || ||||| ||||| || | || || | ||||| || |||| Sbjct 60203 GCAAGCCCCAGCTCGGCAAGAATAGGGCAGCTCGATTCCAGCATTCTCAGCTGCATCTA 60145 >seq2257 Length=219887 Score = 93.3 bits (102), Expect = 5e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| ||||||||||||| || || ||||| | |||| ||| | ||||| ||||| Sbjct 145742 ATCTGAAGTTGGGTATGAAACACAAGTCAGCAGGTAACCCTCTTTCATTTGATTATCATC 145801 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 || ||||| ||| || || || ||||| ||| | |||||||| ||||| || || Sbjct 145802 AAGGAAGGAACCATCAGACTGGTCCACTGTACCTGATACCATCTTACCGGCACAGGTGGA 145861 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTA 102992 || || ||||| || || ||||| ||||| || | || || | ||||| || |||| Sbjct 145862 GCAAGCCCCAGCTCGGCAAGAATAGGGCAGCTCGATTCCAGCATTCTCAGCTGCATCTA 145920 >seq4464 Length=199901 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/277 (67%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 101731 ACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATC--GACTGGTGCCAACCATGCAC 101788 ||||| ||| |||| || ||||| ||| | |||||| || | | || ||| ||| Sbjct 140042 ACCTCCTCAAAGAATATAAGGTTTTTATGAGATTGATCTTGAAT--TAACATCCAAGCAT 140099 Query 101789 GTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTG 101848 | | |||||| || |||||||| || || ||| || || || || | |||| || | Sbjct 140100 GAATACCTTCGTTTAATAGGATATTATTGACGTAAAAAGTTTCAAATTTAGGATATTTCG 140159 Query 101849 CTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAA 101908 ||| | || ||||| | || ||| |||||||| | ||||| ||| | ||| | | Sbjct 140160 TTGCACGAATTTCTTGATAAACGAAGACATAAGCATGTAGGTTTAGACCTAGATTGACTA 140219 Query 101909 TACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACC 101968 || || || |||| | ||| | || ||||| | |||||||||||| | Sbjct 140220 CTTGGAGAGAGCTCATCCATAAACCGGATAGTGGTACAAATAACATAAAGAAATGTACTT 140279 Query 101969 ACCTCTTATTACTAAATGCAATACCAAAGATTTGAGA 102005 | || ||||| ||| |||| ||||||||||| || Sbjct 140280 AACTTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 140316 >seq6680 Length=52110 Score = 82.4 bits (90), Expect = 1e-10 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATT-ACTAAATGCAATACCAAAGATTTG 102002 ||||| | |||||||||| | ||||| |||| | |||| || ||||||||||| Sbjct 10757 ACAAATAACATAAAGAAACGTAACCAATGAATATTGAAGAAATA-AACCCCAAAGATTTG 10815 Query 102003 AGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAA 102062 | ||| || |||| || || |||||||||||||| ||||| |||| || | | || Sbjct 10816 CGGCCAAAAGTGGTTAGCAGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAA 10875 Query 102063 TGCTTTGAAAGTGTTTGCTTGATCACCATCTTCA 102096 || ||| || ||||| ||||||||||||| Sbjct 10876 AGCACGGAATGTATTTGCACCATCACCATCTTCA 10909 >seq1746 Length=218889 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAG-AACAAAACCTGCTTCTAGTTGATCGTCAT 102872 ||| ||||||||||||| | ||| ||||| | | ||| |||| | ||||| ||||| Sbjct 200745 ATCTGAAGTTGGGTATGAAATGCAAGTCAGCAGGTACCCCTCCTTC-ATTTGATTGTCAT 200803 Query 102873 CCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAG 102932 | || ||||| ||| || || || | ||| ||| | ||| | || ||||| |||| Sbjct 200804 CAAGGAAGGAACCATCAGACTGGTCCACTGAACCTGATACCATCATGCCGGCACAGGTAG 200863 Query 102933 AACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTA 102992 | || || || || | || ||||| ||||| || | ||||| | ||||| || |||| Sbjct 200864 AGCATGCCCCGGCTCTGCATGAATAGGGCAGCTCGATTCCTGCATTCTCAGCTGCATCTA 200923 Query 102993 GAATATA 102999 | || || Sbjct 200924 GGATGTA 200930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633384466171560